Protein Info for HP15_1070 in Marinobacter adhaerens HP15

Annotation: TRAP-type uncharacterized transport system, fused permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 867 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 73 to 90 (18 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 129 to 146 (18 residues), see Phobius details amino acids 153 to 174 (22 residues), see Phobius details amino acids 198 to 221 (24 residues), see Phobius details amino acids 249 to 270 (22 residues), see Phobius details amino acids 303 to 322 (20 residues), see Phobius details amino acids 328 to 347 (20 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details amino acids 398 to 419 (22 residues), see Phobius details amino acids 442 to 462 (21 residues), see Phobius details amino acids 469 to 488 (20 residues), see Phobius details amino acids 521 to 546 (26 residues), see Phobius details amino acids 556 to 576 (21 residues), see Phobius details amino acids 580 to 620 (41 residues), see Phobius details amino acids 626 to 643 (18 residues), see Phobius details amino acids 656 to 677 (22 residues), see Phobius details amino acids 682 to 702 (21 residues), see Phobius details amino acids 710 to 727 (18 residues), see Phobius details amino acids 837 to 854 (18 residues), see Phobius details TIGR02123: TRAP transporter, 4TM/12TM fusion protein" amino acids 36 to 730 (695 residues), 691.8 bits, see alignment E=5e-212 PF06808: DctM" amino acids 141 to 674 (534 residues), 253.7 bits, see alignment E=3.1e-79 PF11874: DUF3394" amino acids 680 to 857 (178 residues), 211.9 bits, see alignment E=6.3e-67

Best Hits

KEGG orthology group: None (inferred from 87% identity to maq:Maqu_2062)

Predicted SEED Role

"TRAP-type uncharacterized transport system, fused permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PG92 at UniProt or InterPro

Protein Sequence (867 amino acids)

>HP15_1070 TRAP-type uncharacterized transport system, fused permease component (Marinobacter adhaerens HP15)
MATSDPANGAGAGGSSNVDQILQTETGGRATSGYAAVILFIVPLVWSLFQLWIASPLPYI
FNFAIFNSTEARSIHLAFAVFLAFSAFPMIKGRHVNIVPIYDWILALVAAFCASYLYVFY
EELSTRPGAPITQDLWVALIGLVLLLEATRRSLGLPLTIVAAVFITYSIAGPYMPDVIAH
KGVSLSKLASHQWLGTEGVFGVALGVSTSFVFLFVLFGALLERAGAGNYFIKVAYAMLGH
MRGGPAKAAVVSSGLSGVISGSSIANVVTTGTFTIPLMKRVGFPATKAGAVEVAASTNGQ
LTPPIMGAAAFLMVEYVGISYLEVIKHAILPAMISYVALIYIVHLEACKLNMQGIERLNK
PTLAQRLLNWVVILIGLSVLTLAVYYGVGWTKTLFGEAAMWVLAPLLVLIYVGLVGYATR
FPELEEDDPEKDMGELPPVGPTVKTGLYFLLPVVVLVWCLTVERFSPQLSAFWATLFMIF
IVVTQRPLKAFFYKHGNFLGEFKDGVFDLAHSLATGARNMVGIGVATATAGIVVGTVTLT
GIGLVMTEFVEFLSGGNLLLMLIFTAIISLILGMGLPTTANYIVVSTLMAPVIVTLGAQN
GLIVPLIAVHLFVFYFGILADDTPPVGLAAYAAAAISGADPIRTGIQGFTYDIRTAILPF
MFIFNTQLLLIGLTGWFDLLVTIFSAVTAMLVFSAATQGFWFTKSYKWESLLLLLITFTM
FRPGFWWDMIYPPTEDQPGAQIMEYVEDVPADKPIVLKASGMTIDGDEVTTYVRLEIPAG
DSPEQRLMDAGLELSPDGEKMAVDFVGFGSPAEDAGIQFGWTIDAVQVHLERPPKELMFI
PALALLGLLAFGQLRRRAREEAAGQPA