Protein Info for Psest_1124 in Pseudomonas stutzeri RCH2

Annotation: ATP-dependent transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 873 PF17874: TPR_MalT" amino acids 445 to 764 (320 residues), 51.3 bits, see alignment E=1.1e-17 PF00196: GerE" amino acids 812 to 867 (56 residues), 68.9 bits, see alignment 2.2e-23

Best Hits

KEGG orthology group: None (inferred from 89% identity to psa:PST_3171)

Predicted SEED Role

"Transcriptional regulator, LuxR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GG20 at UniProt or InterPro

Protein Sequence (873 amino acids)

>Psest_1124 ATP-dependent transcriptional regulator (Pseudomonas stutzeri RCH2)
MSVRFIPDALSTEANAAEHHALIPRLPPLHVGRPRLVQALLDTDCRLRLICAPAGFGKSV
LMSECARLVPPGTCLVWLDLGGRMCTVHALYEQLCTALGEPACKETGTESDMLTLLRGVG
QPLWIMLDDYPRDDCPELDACLDMLLDMGPAPVSWWVSSRRQPAWKLPRLLLQGHLFELE
AEALAFTAEELDQILRVHRLTLSPESFQQLQRGMEGWPAGVCLMLLNADEQALRERLVAG
TPLLRDYVQREVMAGLTDEVRRALLALARMPRFSAALCDHVLDGIGREIVDVLKTRQLFI
RQIDNCGEWFRLWKPLAQMLQRSGENTVPTQVHLRACQWFASRGEMREAVEHALWAGQPE
VAANYLQRYGQEQLLIGDNVSRFLKWRSELPQDLFASTTRLIVLQGWALIISARLDEVDD
CLAELAKFFPQPDARRQAQLLAQWQALRGFLARLRGEPEARQNCLQALEVLSDHAWAQRV
LCYQVLTQQAMAEGELELAQQYNSEGMKLARLKGSVLYEVMLSVDRIQLLELTGEFERAV
GVLNEALQALRESVRHSPLIGRLQLLQGHLLAYQGLDEPAQEAYQLGKAETETCGDSYCF
FGYVGLAELAARNHEFACAYHWLRDAERLSQWRHVPEARFRGILPLINGVAWLHQGELRK
ARSALCQVLELYEGQGYLSPSGFYELLPRVRRYLAVIDVLDGQPARAIAALREQVEQNLQ
AQRLGLACECRFSLAEALHADGQAVEAELEVRLALGEAARQHLVKPLYELHHRQPQWLAA
MLPALRGESLRQRLLRYEREPEVVLPAPDETVLSNRELTVLRLIAQGCSNQEIAEQLFIS
LHTVKTHARRINTKLGVARRTQAVAKAKALAWL