Protein Info for HP15_1048 in Marinobacter adhaerens HP15

Annotation: recombinase A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 TIGR02012: protein RecA" amino acids 4 to 324 (321 residues), 560.8 bits, see alignment E=4.8e-173 PF00154: RecA" amino acids 7 to 267 (261 residues), 478.3 bits, see alignment E=1.2e-147 PF08423: Rad51" amino acids 33 to 226 (194 residues), 35 bits, see alignment E=2e-12 PF06745: ATPase" amino acids 39 to 116 (78 residues), 29.8 bits, see alignment E=8.1e-11 PF21096: RecA_C" amino acids 272 to 326 (55 residues), 87 bits, see alignment 1.5e-28

Best Hits

Swiss-Prot: 95% identical to RECA_MARHV: Protein RecA (recA) from Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8)

KEGG orthology group: K03553, recombination protein RecA (inferred from 95% identity to maq:Maqu_2082)

MetaCyc: 69% identical to DNA recombination/repair protein RecA (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"RecA protein" in subsystem DNA-replication or DNA repair, bacterial or DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PG70 at UniProt or InterPro

Protein Sequence (348 amino acids)

>HP15_1048 recombinase A (Marinobacter adhaerens HP15)
MEDNRKKALSAALGQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRI
CEIYGPESSGKTTLTLQVIAEAQKAGKTCAFVDAEHALDPVYAEKLGVNVDDLLVSQPDT
GEQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGN
VKHANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQG
KANACKFLEENMDIANEIEAKVRDKLMPKPEPRKDAKEEPAEANGELL