Protein Info for Psest_1085 in Pseudomonas stutzeri RCH2

Annotation: UV damage repair endonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 PF03851: UvdE" amino acids 40 to 266 (227 residues), 142.4 bits, see alignment E=8.5e-46

Best Hits

KEGG orthology group: None (inferred from 93% identity to psa:PST_3212)

Predicted SEED Role

"UV damage repair endonuclease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GI18 at UniProt or InterPro

Protein Sequence (340 amino acids)

>Psest_1085 UV damage repair endonuclease (Pseudomonas stutzeri RCH2)
MPRIGFACMYRHPQQSLSLKELERIERTFNPRSTTLRWMASVGRAAAEARLEEIVEHNLS
AQRVLLEYVATLPPMLRMLRLSSDLLPFYSHAEIAPFYRRAEIRNRLEAGFAAIGELARA
NDIRLSMHPGQYCVLGSDKPQVVENSLAEFEYHADMIRMMGYGRRFQDFKCNLHIAGRLG
AEGVRAVWPRLSSEARHCITFENDEKTYGLDDCLSLADLAPVVLDIHHCWIHEGRYIEPD
DPRIERVLESWRGVRPTMHYSQPQESLMELGFAPEQKLEIPELLEKVNKRDLYAHSKRMW
NRWTNRYAFQFLDRFDIMLEAKDKNLAALDFHHEYQRERA