Protein Info for PGA1_c10530 in Phaeobacter inhibens DSM 17395

Annotation: NADH-quinone oxidoreductase subunit L

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 708 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 30 to 50 (21 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 118 to 135 (18 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 223 to 246 (24 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details amino acids 288 to 309 (22 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details amino acids 344 to 364 (21 residues), see Phobius details amino acids 385 to 407 (23 residues), see Phobius details amino acids 427 to 451 (25 residues), see Phobius details amino acids 471 to 491 (21 residues), see Phobius details amino acids 584 to 604 (21 residues), see Phobius details amino acids 658 to 676 (19 residues), see Phobius details amino acids 682 to 703 (22 residues), see Phobius details TIGR01974: proton-translocating NADH-quinone oxidoreductase, chain L" amino acids 3 to 498 (496 residues), 707.7 bits, see alignment E=9.2e-217 PF00662: Proton_antipo_N" amino acids 62 to 108 (47 residues), 68.4 bits, see alignment 5.9e-23 PF00361: Proton_antipo_M" amino acids 135 to 439 (305 residues), 298 bits, see alignment E=1.1e-92

Best Hits

KEGG orthology group: K00341, NADH dehydrogenase I subunit L [EC: 1.6.5.3] (inferred from 84% identity to sil:SPO2765)

Predicted SEED Role

"NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)" in subsystem Respiratory Complex I (EC 1.6.5.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.3

Use Curated BLAST to search for 1.6.5.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DP12 at UniProt or InterPro

Protein Sequence (708 amino acids)

>PGA1_c10530 NADH-quinone oxidoreductase subunit L (Phaeobacter inhibens DSM 17395)
METILLFAPLVGAIICGFGWKFIGETAATWTATGLLFLSALLSWIVFLSFDGVTQSIEIM
RWIESGSLSTSWAIRLDRMTAIMLIVVTTVSSLVHLYSFGYMAHDPQWKDGESYKPRFFA
YLSFFTFAMLMLVTSDNLVQMFFGWEGVGVASYLLIGFYYRKPSANAAAMKAFIVNRVGD
FGFALGIFALFFLTDSINFDDIFAAVPQLAETQLSFLWSEWNAANLIAVLLFIGAMGKSA
QLILHTWLPDAMEGPTPVSALIHAATMVTAGVFLVCRMSPLMEFAPEATTFITVLGATTA
FFAATVGLVQTDIKRVIAYSTCSQLGYMFVAAGVGMYSAAMFHLFTHAFFKAMLFLGAGS
VIHAMHHEQDMMNYGGLRKKIPYTFAAMMIGTLAITGVGIPLTHFGFAGFLSKDAIIESA
YAGGSSYGFWMLVIAAAMTSFYSWRLIFLTFYGKPRGDKHTHDHAHESPMVMLIPLGVLA
LGAIFSGMLWYNSFFGHADKVGKFYGIPVAEASAAAHGEEAAEDAGHGADDSHGTTADDG
HGAAEASGEHHYVFAGQPGEGALYFGADNTVLDDAHAAPKWVKVSPFIAMLFGLGLAILF
YIVNPSLPGRLAKQQQPLYLFLKNKWYFDELYDFVFVKPTLMIGRFLWKRGDGKTIDGAL
NGIAMGIIPFFTRLAGRAQSGYIFTYAFWMVLGIAALVTWMSIGGGAH