Protein Info for EX31_RS24865 in Rahnella sp. WP5

Annotation: membrane integrity lipid transport subunit YebS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 53 to 71 (19 residues), see Phobius details amino acids 105 to 128 (24 residues), see Phobius details amino acids 149 to 166 (18 residues), see Phobius details amino acids 172 to 195 (24 residues), see Phobius details amino acids 254 to 277 (24 residues), see Phobius details amino acids 299 to 327 (29 residues), see Phobius details amino acids 344 to 366 (23 residues), see Phobius details amino acids 374 to 396 (23 residues), see Phobius details TIGR00155: integral membrane protein, PqiA family" amino acids 5 to 405 (401 residues), 553.5 bits, see alignment E=1.6e-170 PF04403: PqiA" amino acids 55 to 204 (150 residues), 125.3 bits, see alignment E=1e-40 amino acids 250 to 405 (156 residues), 153.9 bits, see alignment E=1.6e-49

Best Hits

Swiss-Prot: 66% identical to YEBS_ECOLI: Intermembrane transport protein YebS (yebS) from Escherichia coli (strain K12)

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 99% identity to rah:Rahaq_2853)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>EX31_RS24865 membrane integrity lipid transport subunit YebS (Rahnella sp. WP5)
MKINTISVQLPHVRYQRCHECDYLFSLPALKRTQTAHCPRCNAKVEKGKVCSLPRLITMA
ISILLLMPFAYTEPLISIRLLGTRIDASLLEGIWQMSRQGDPVTASMVAFCTIGAPLTLA
VSILYLHFGSKLGMNLKPVLLMLDRLKDWVMLDIYLIGMAVASIKVKEYADINAGVALAA
YLMMTVMVTLTMINLNIEQLWEEFYPQRRPKGVPSSLRLCIACKFTGLPDERGRCPRCHV
PMQQRYKHSLQKTWAALIAAMMFLIPANLLPISIIYANGQQLKDTIFSGVVSLATSGNIP
IAAIVFIASVLVPFTKVIVMLTLLLSIHFKAIQGLKTRIRLLRLVTWIGRWSMLDLFVIS
LMMSLVNRDQLLSFTMGPAAFYFGSAVILTILAVEWLDSRLIWDAHATGNAEYTD