Protein Info for EX31_RS24830 in Rahnella sp. WP5

Annotation: WG repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 946 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF14903: WG_beta_rep" amino acids 87 to 121 (35 residues), 29.9 bits, see alignment (E = 2.4e-11) amino acids 121 to 155 (35 residues), 39.7 bits, see alignment (E = 2e-14) amino acids 510 to 536 (27 residues), 13.4 bits, see alignment (E = 3.5e-06) amino acids 581 to 611 (31 residues), 15.7 bits, see alignment (E = 6.5e-07) amino acids 617 to 638 (22 residues), 14.6 bits, see alignment (E = 1.5e-06) amino acids 871 to 900 (30 residues), 25 bits, see alignment (E = 8.2e-10)

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_2860)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (946 amino acids)

>EX31_RS24830 WG repeat-containing protein (Rahnella sp. WP5)
MIVSKPSRLRNALRCALNTSSTLALLTLTSAAIAAEPDSCFAPLSAAQADAQRHNALPVV
QNLCIRDVHEGRAAVLLPAADANGERWGFLDNQGQLVIKPVFEKVGDYHFGAAAAMQQGK
WGFIDLTGNWMIPPAFDRVQPFTESGLAVVTAGGKPQIIDHKGAQVGKALDELVDDATLS
DGIPARLSLTFNSVLLSPDGVRHVATDKMEVVEPFGPKDLFIAFDASKGYGIIDGNLTWR
VLPQYSAITLDPQNSSVALAKNAEGITLIRTDGVPDEQKYLSVSEETGAFWLAKTPEGIK
LLDNSAVVIATFSEAEASSLRVSGDYVLNPVTKDALTLYVPGRKQPLLLPAGSEPWEHST
GEYLITTKGDPKKVNAIVAPSGGIIGGSQNVGWLAQITSAEVINHRLWLRNDQGDVVNIV
DASGKALLNQKNISALDGSRIEPLYVRNDVTSAQSPLALIRPESGSGKNGAGFLRPDGSL
QLDSKWQDIQSADADGNIEQFIVRTAEGTGVVDAQGKIVIPLTEDNISPFVHGYALDYLD
GKLTALDHAGKHYDLPNVFEIESVGNGWFRFRETAAEGALWGIFDVNTQKTVVQPSYQDV
GDYADGLAAFRAPGGLWGIVDGQGKIIVEAKYAKAKRINSALWLLTQPAAPDQAESSVIA
EIIGNDAKARVAPTAGLSVTQFSDGRILATSVAGQSWLLDPQGNIELHEQQTRISALGDW
VKLSRKPQEGYLSAQGEWQIQPVAEAQSSAFVQGRALRSTPAGYELIDDKGVRVAAMPEG
RWTMPSASTWSVSNDPQDGTPATRYVDNTGKLVLTVQGNASLMVNDHAVLTRADGMKTWI
NGQGKQAEGIAYADLGLPVDGLAFAKTNNNYGFVDVQGNFAIAPLFSAVSPFDSGVAVVS
TPAMSMMIDKTGKPLARIDKECGIAVLYGAGSARQWPVAMPDNCKP