Protein Info for EX31_RS24355 in Rahnella sp. WP5

Annotation: multidrug efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1031 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 341 to 360 (20 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details amino acids 394 to 414 (21 residues), see Phobius details amino acids 441 to 464 (24 residues), see Phobius details amino acids 474 to 499 (26 residues), see Phobius details amino acids 535 to 554 (20 residues), see Phobius details amino acids 863 to 883 (21 residues), see Phobius details amino acids 890 to 912 (23 residues), see Phobius details amino acids 918 to 939 (22 residues), see Phobius details amino acids 966 to 988 (23 residues), see Phobius details amino acids 994 to 1021 (28 residues), see Phobius details PF00873: ACR_tran" amino acids 1 to 1021 (1021 residues), 1061.9 bits, see alignment E=0 TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 1 to 1024 (1024 residues), 1152 bits, see alignment E=0 PF03176: MMPL" amino acids 337 to 512 (176 residues), 22.4 bits, see alignment E=8.5e-09 amino acids 786 to 1029 (244 residues), 34 bits, see alignment E=2.4e-12

Best Hits

Swiss-Prot: 49% identical to BEPG_BRUSU: Efflux pump membrane transporter BepG (bepG) from Brucella suis biovar 1 (strain 1330)

KEGG orthology group: None (inferred from 99% identity to rah:Rahaq_2973)

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1031 amino acids)

>EX31_RS24355 multidrug efflux RND transporter permease subunit (Rahnella sp. WP5)
MLQQFIKRPRFAVVIALVTALIGAVALKVIPVEQYPDITPPVVSVSAIYPGASARDVAES
VAAPIEAQVNGVSNMLYMSSNSGNNGSYTLTITFASGTDPDTAAVEVQNRISQVSSRLPP
EVLNTGVSVRKQASNILMGISLLSPENTHDMLFISNFASIQLRDALARVDGVGDVRVFGS
RDYSMRIWLDPRKMEALDVSSMEISAAIQNQNVQAAAGQIGASPSPSMQQQTLTISGAGR
LSSPEEFGNIIVRKNAHGGTVRLRDVARIELGAQDYQVNATLNQTPSAFLSVYPAPGANA
LNVANAVREEMSRQARNFPDDLTYEIKFDSTRFVSATLDEIAVSLVLTFVVVLSIVYLFL
QSVRATFIVALTIPVSLLGTFAVLYAFGYSANTLSLFAIILALTVVVDDAIVVVENVERL
MMEDPSLGRVAATRKALKQIAGPVIATTVVLLAVFVPIAVLPGITGALYRQFAVTLSAAV
VLSSINALTLTPALCATLLKPRPAKPARVFHWFNQGLDAVRDVYVKAARGISKSAFTSVV
TVLVIGGACVWGYSSLPKSFLPDEDQGYFFVNVQLPDGASLNRTDAVLGQMQQIMQKDPA
VEDVIAISGFSLLSGGSSPNTAFGIVLLKPWGDRDSVDQVIGRLQPAMAGIPSAMIMAIN
PPAISGLGTASGLDLRLQALQGQSPQELAVTGQALIQAANQDPNLSRVFTTFSASVPEIA
LSVDRDRAALLQVPVSRIFGTLQTSLGGVNVSDFIINNRLFNVQMQNEMEDRQRADQIST
LTVRSDNGSLVSLAKMVEMTPSLGAPFITQYNQFPSLAISGSAAPGISSGEAMAQMEHIL
SEKLPAGYGYEWTGMSLQEIQAGGQAILIYAAALLFAYLFLVAQYESWSIPLVVMISVIF
AVFGAIGGLHMAGLSNDVYAQIGMVLLIGLAAKNAILIVEFSKARREEGASVSEAAQDGA
KQRFRAVMMTAISFILGVLPLVMASGAGAMSRHIIGVTVFSGMLLSTTVGILFIPALYLH
IQRLREWVKSR