Protein Info for EX31_RS24235 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 transmembrane" amino acids 19 to 40 (22 residues), see Phobius details amino acids 67 to 80 (14 residues), see Phobius details amino acids 92 to 109 (18 residues), see Phobius details amino acids 116 to 139 (24 residues), see Phobius details amino acids 148 to 172 (25 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 213 to 233 (21 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 283 to 306 (24 residues), see Phobius details amino acids 318 to 341 (24 residues), see Phobius details amino acids 349 to 366 (18 residues), see Phobius details amino acids 378 to 399 (22 residues), see Phobius details amino acids 417 to 435 (19 residues), see Phobius details amino acids 494 to 519 (26 residues), see Phobius details PF07690: MFS_1" amino acids 31 to 294 (264 residues), 77.1 bits, see alignment E=6.3e-26

Best Hits

KEGG orthology group: None (inferred from 98% identity to rah:Rahaq_2990)

Predicted SEED Role

"Inner membrane component of tripartite multidrug resistance system" in subsystem Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (533 amino acids)

>EX31_RS24235 MFS transporter (Rahnella sp. WP5)
MNQTIAMAPVAALPVPPPFTLRLVIGLLGVLIASLCSGLNDRVTDIALADVRGALSISTD
EGSWLIGAYQAAEVSAMMLAPWFAMTFSLRRFTVFVTLGFVLIAAILPYTPNLPVFIALR
AVQGVFGGALPPLLMTSALRFMPPQYKLYGLSAYALTATFGPNMATSLAAIWTDYVGWEW
VFWQVIPPCLLAVVMIGYGLPQDPPRFERFRQMDVVGMLTGTGGVTLLVLALQQGERLDW
FSSPLITLMFFTALGLLTVFLVNEWYHPLPLFKLQMLRRHNLTHGLITLFALMFLFLSGS
ALPASYMEQVGGFRAIQVGPLALTIGLPQLLLAPLIAFVLTMRWIDSRWVLVCGLGLVGF
SCYWGTQLTGAWARDNFYLIQVMQAFGQPMAVLPILMSATSVVQPPEGPFASAMFNTTRG
LGSVMGGSLLAVFVSHREQFHSNVLLNHAGSVSYLLSQPYGGDSSFLAPLNSGGAAISTE
VLTRFSQGVRQQALVLGISDAYMVIIGLALSLILLVAILPKRTYPPQSLVKRP