Protein Info for EX31_RS24105 in Rahnella sp. WP5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1617 transmembrane" amino acids 1249 to 1269 (21 residues), see Phobius details amino acids 1387 to 1402 (16 residues), see Phobius details amino acids 1426 to 1445 (20 residues), see Phobius details PF13385: Laminin_G_3" amino acids 502 to 652 (151 residues), 71.6 bits, see alignment E=2e-23 PF02210: Laminin_G_2" amino acids 541 to 643 (103 residues), 23.1 bits, see alignment 2.2e-08 PF01120: Alpha_L_fucos" amino acids 903 to 1197 (295 residues), 36.4 bits, see alignment E=1.1e-12 PF10091: Glycoamylase" amino acids 1380 to 1596 (217 residues), 218.2 bits, see alignment E=2.6e-68

Best Hits

KEGG orthology group: None (inferred from 99% identity to rah:Rahaq_3014)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1617 amino acids)

>EX31_RS24105 hypothetical protein (Rahnella sp. WP5)
MCSAKQDVQPEIIIQDNDPSIIYTGNWTRYTGRAYSDDGASMALYDNGKYFEYTFTGSGI
GYYSEGNTDQGEIDFYLDGVLHGTATTKTSTRQYSDLIYYITDISPGEHTFKGVKKNGSW
MLLDQLKVYNDAPLTAEVEQFLGAGSEGTARLQFNQSLDSQSGTEPGNYQLNNGASVVSV
TLSNDRKTADLTITGLTTQTDYTLTLSQISNQILTTTVQNQTFTLNYTALPAEQVYDDPV
ADIVYAGKWTHSTNRTQSIFYHTTSYTQSNNSATFTLNFIGTGISYIAESSSDQGDVEIY
IDGVSQGRISTWSSTHLDSHILYQKVDLPFGSHTIQGIKRSGSYAHLDALKVYNAGDLEI
VETTTDSNNNILVTFNQALDSTSALTLTNSVLDNGGVIQSVALNDLKTTLTLNVPDLQTG
IPYTLTFHGLKNEILTKDFADIQATFTYNQGMKYYYTFDDETDGAFLETINNQRSAISQG
QAPSLVTAKLNNGIDFASGQPGYIDLGVLDCLQYSAFTVEAWIYPRSTAMSMIVSQDTRN
NNNQRWQLYTQDNQLVCTMSNDTNSTSFTLKTKSFIPLNAWTHVAILRQGDEYALAVNGN
IAMTGGSNVVQTNVTTSVKVGGRLDTNGAVTDAFDGIIDEVKFFDSQISPQTLSGHYRQL
ADTNFNLQASNGTLKAAFVHPQSVEPVLSDFRTHLKVNSEMRVGLPITGFVWDAASNTAT
LSFTPLELAAVEQNIIFTVRYRELPVDADFSLEPTTIAAPSLSSLVLNGSLLTREILRPD
YLFTDPGGFAENGSEYLWEVASSTTGPFSTINGLHTRTMMLLPEHNGKYIRVTVTPRNER
LCFGESQSVIVGPVVARSGNPRTDWFRNAHYGVSHHFLPNYLNLSSDIPQDEKWQPGESW
DDFLSTFDVQAYAKAVSETGAGFVLLTMDQHAGYNLGPNKTHDAILDIEPGVRSAIRDLP
LEMAQELAKYDIKLMLYMMGYAPAKASLVYYDDDANQHSPDRWGDMLVPHLYECSPFDNV
ITSETTRMNYAVVREFGERYGDLLAGWWFDGMWNNYTDMNQPYNINDVVDGSRAGNPDRI
VTGIGVHTLTYTDYSAGESYGSKNAEGNYVMTDLPDTRWDSNDGYHQWFRWIALGNQAVN
AGWGAMGSSDTGKHYDTDALAQWVKDVAARDGVACMDIRINRFGELDPIVSQQLAAVNAA
VYPSLDDEQLLDKVQQTTLRYFWDYAHPTSGLAFERLYRNSDAGPDEPIAIGGSGFGIMG
ILVAIERGFVSREDGYDRINKMVDFLGGPTTRYKGAWPHWINGSTGATIPFGSDDNGADL
VETSYMMQGLLTARQYFNDTALTDKINALWHDIDWNYFTNNSNSLYWHIDKDLQFTMGMK
ITGWNEAMITYLLAIASPTHAIDPALWKSGWSQGSYNNKNKVYYDITLPIGPTMGGPMFF
MHYSFLGFDPRNLRDSANNVNYFQQGEAQSQIQQAYSIDNPGGFNGYAENYWGLTSGYGP
AGYASHDPTSDDGTITLTAALCDLPYLPEASMAALRHFYDDLGNALWTEKCGFIDGVNLS
KNWYSDGYLAIDQGPIIGMIENHRSGLLWRYFMTCPEIQQALTLIGFVDDDIPPRES