Protein Info for EX31_RS23785 in Rahnella sp. WP5

Annotation: DUF262 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 773 PF03235: DUF262" amino acids 24 to 192 (169 residues), 55.3 bits, see alignment E=9.8e-19 amino acids 407 to 554 (148 residues), 62.3 bits, see alignment E=7.2e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (773 amino acids)

>EX31_RS23785 DUF262 domain-containing protein (Rahnella sp. WP5)
MIDSDFERVFKNNIKISTRSITVKTLLSERNLNRINYKPYYQRNYVWDVTKGTFFIESIL
LGTDIPPLILFKSGKMMEVIDGRQRFETLKRFKENSLKLNANGLMKLKVLKGKTFFDLQP
NIIETLLDTKVRLFEFEVINEPKLSPGIEDKIKKEIFRRYNTGITTLKSNELDNAKYDKD
TLTDIMESDISSDKVFANNITRCFFSNKKNKAEIVSNTLDFFRRYIILSSFPITTYAGSG
SRTEIRELLYDFIVDNVESPEDYYAVFKGIINEVISLHVSLSENPLLDNKLIYECLLWAL
TILHKEGHEYEIDDGIVGSISEHYIKNIDKYSLSDSHYYGNILERFNDTAKLFYKIFKVD
FSLYIKDEKFKEQVKKLKQTEEEGLLKIETLNNLRVLKPEPSSIPVEEIINDLNTNKYLI
RPSYQRQEKINTRKASSIIESILLGIYLPPIFIYKNKDSVKEVIDGQQRLLSILGFMGKT
YKDENGISQYSKNNNFSLNNLYILKELNGRKFSSLPDSYIEKIYDFDLNIIEIDSLVNSD
FEPIDLFIRLNNKPYPIKDNSFEMWNSTVNNGIIDKVKNITNDNLDWFYLRVTNSERTSD
RMENEEMIAVLSYLNFNARNGEKSKGVEFYLKQDRLNIRISNKSIITNLLQSLDEDPLKQ
KMFSDSLDETKLFISKLEVVIDKPKIELAAELNNFLNVKNTTGFKRSLQEIYLLWMVLNR
IGYDSVVENHCEINSDLLILLKKMKNLENSIINEEFLTRFTESIDAMVEKYNH