Protein Info for EX31_RS23765 in Rahnella sp. WP5

Annotation: Bax inhibitor-1/YccA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 50 to 76 (27 residues), see Phobius details amino acids 86 to 108 (23 residues), see Phobius details amino acids 114 to 134 (21 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 209 to 232 (24 residues), see Phobius details PF01027: Bax1-I" amino acids 20 to 232 (213 residues), 211.9 bits, see alignment E=4.6e-67

Best Hits

Swiss-Prot: 69% identical to YBHL_ECOLI: Inner membrane protein YbhL (ybhL) from Escherichia coli (strain K12)

KEGG orthology group: K06890, (no description) (inferred from 100% identity to rah:Rahaq_3083)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>EX31_RS23765 Bax inhibitor-1/YccA family protein (Rahnella sp. WP5)
MDRYPRSNGSIVERANTGIQAYMAQVYGWMFCGLLLTAFVAWYASGSEKIMSFVFSSQIT
FFGLIIAQLALVFVISGMVNRLSGTVATGLFMLYSALTGLTLSSIFLVYTGDSIFGTFIV
AAGMFGAMSVYGYVTKRDLTGIGSMLFMALIGLVLASLVNMWLKSSGLANIISYAGVLIF
VGLTAYDTQKLKNMGAQLSADDRDNFRKYSIVGALTLYLDFINLFLMLLRIFGNRR