Protein Info for EX31_RS23590 in Rahnella sp. WP5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 39 to 58 (20 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 163 to 164 (2 residues), see Phobius details amino acids 166 to 184 (19 residues), see Phobius details amino acids 197 to 223 (27 residues), see Phobius details amino acids 235 to 255 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 96% identity to rah:Rahaq_3118)

Predicted SEED Role

"Major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (276 amino acids)

>EX31_RS23590 hypothetical protein (Rahnella sp. WP5)
MNAKKLPMPLLASALGTLFVLNLTLTLLSVAFYGLDTPLSHSLAGAAALFFVLFIISERY
HPEPLMPRHLRSSLLLQISLWTRIFVTAVTYATWFMLAVAMYQLYGLGVPGIILSFVPLL
LIMLPGKALSEKLGRGMTSARILLWGFMIVAGGLEGMAMTPSFWPVLLPGMLLTGFGAGM
VRHAAAAERDLLTGDEYHYAILLGGWVRVSSTIVILALLILLLRNNPGQQGIENGFSLLA
ALALAGVVTALMIPAKAKQNNVTARQSDNGRFRHQE