Protein Info for EX31_RS23410 in Rahnella sp. WP5

Annotation: autotransporter outer membrane beta-barrel domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 967 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF18883: AC_1" amino acids 503 to 614 (112 residues), 77.3 bits, see alignment E=9.4e-26 TIGR01414: outer membrane autotransporter barrel domain" amino acids 520 to 967 (448 residues), 247.3 bits, see alignment E=1.5e-77 PF03797: Autotransporter" amino acids 704 to 944 (241 residues), 129.9 bits, see alignment E=1.5e-41

Best Hits

KEGG orthology group: None (inferred from 95% identity to rah:Rahaq_3155)

Predicted SEED Role

"putative autotransporter protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (967 amino acids)

>EX31_RS23410 autotransporter outer membrane beta-barrel domain-containing protein (Rahnella sp. WP5)
MEEYREHPHLFKKTLLSSAIFSLLLPSSIALATTTFSTGITPADALSFATTGTGDHAYTI
TGAGTEVIVDGEITVPGIPSPVPVQSVVSTTGSEAYAFNIISGGKLILNYADVSTTDSSK
TFNIITGASAEINNTDIRTGKDDSSVIYVSDVGSTLTGNDIRINSDAAQAQGINIQSGAS
VNLSNVNIELTNAKHALTVSDASLSIENLTVKQNSAGSQNVIYASGSSDAKRTTVDIING
NVEMTGTDDIMVNSNAYSDVTLTGGTYTTTGNNNIGFFASQGATLTAKNIVLKTEGTRSA
AAVATGSGIMDLDGAEITTYGANSNLLVAMNDSTLDANAVTGISTGEGASAVRSYANSQM
TISNSELSATGALANGIYMQGFDAEHQAIVTLDNSLVSSATSEGILAAGANTRINVNNRS
TVQSGNGVLLKAGSYTSTSTGVTTQSQINLSASNSHMEGDIIADTGSVVDVYLNSGSEWQ
GITASTNSINIDDSSRWTLTGDSTISQMNSGGTTFFTHNGNEYSELTVNSNMTGDGTYRI
NTYLDDSNSPTDKIHVTGDITGQNTLYVTSTGGNGNYTQGNGIEVVTVDGTNTQGTNAFT
LGNSVSAGAFNYGLRKGDITTGEGENWYLSTCANYDCSTPIPAPAPDANPDVNPTPTPSD
DIQPWREEVPGYIAAPALNMQYGFDAIGTYHQRTGGDVLHKDGAWGRIVGTHTENDAGRY
SYDTDTWYAQLGMDLMWDKNEANTERSAGILVTLGRQNTDAEDSLRSNNPIYSVQAGSVD
SDIYSLGGYYTLKAQDGGYIDAVGMGSWYKNSYDSTHDADQDGYGVALSVEAGKPFTLHE
NLKIEPQAQVIYQYLNLEDFNDGISNVSGVSTSNAQARGGVRLFMDNPTWTPYLTLDAVT
TIGDEPEVQFATQRLKAEFSDNWWQTGAGLAGKLSENTTIYTDVRYQKGFDSDLEGYSGN
LGIKVNF