Protein Info for EX31_RS22910 in Rahnella sp. WP5

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 PF13175: AAA_15" amino acids 1 to 46 (46 residues), 36.1 bits, see alignment 1.5e-12 amino acids 245 to 329 (85 residues), 57.9 bits, see alignment E=3.7e-19 PF13476: AAA_23" amino acids 5 to 48 (44 residues), 27.1 bits, see alignment 1.6e-09 PF13304: AAA_21" amino acids 269 to 330 (62 residues), 43 bits, see alignment E=1.5e-14 PF20469: OLD-like_TOPRIM" amino acids 386 to 462 (77 residues), 29 bits, see alignment E=3.1e-10

Best Hits

KEGG orthology group: K07459, putative ATP-dependent endonuclease of the OLD family (inferred from 98% identity to kpe:KPK_1172)

Predicted SEED Role

"FIG131328: Predicted ATP-dependent endonuclease of the OLD family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (583 amino acids)

>EX31_RS22910 AAA family ATPase (Rahnella sp. WP5)
MYLGKLKILRFRSCDDVTVSLRPDLTVLVGENNGGKSNVVDAIRLLTLPLSGRRERYPED
EDVRRYSTVPSFQIEGAFQGLSDTLKGLLISAVPDPTKSEATFGYRYESRSEHAPRGKTT
VWAGRFDTNGPELGSSELIRHVYLPPLRDAHQVLGTSSGARVMALLRNFLPKEQEQDFLA
GVRRADNRPEILTTINTDISTALGLLTNGVRPQIAALDFGSETLLDVARDLRFRMADTGL
IPEDIRSSGLGYSNLLYMATVVVELTKAKEADLTIFLVEEPEAHLHPQLQVLVLEFLLDQ
ARQSASRIVEPGKPEGRIQIVVTTHSPNLTAWVSPRHLVVMRSRHREQDGIAISESVSVP
IAEIGLKPKTLDKISRYLDVTRSALLFGNRAILVEGIAEALLLPVLAQKLVLADDLDGWL
RFKGAVIVPIEGVDFRPYVEVLLRPYGDARIADRLIVITDADPTVLGNRKVDLENLAATH
GAPDALIVLTNQHTLEHEIFGAGNESFLKSVFLRLHRNSRRDWETQIEGIPEQDRPNAFL
KLIEAKKTRKGDLAQAMASRIEAGEPFIVPPYLIDAIRGASRI