Protein Info for EX31_RS22435 in Rahnella sp. WP5

Annotation: Hha toxicity modulator TomB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 122 PF10757: YbaJ" amino acids 1 to 118 (118 residues), 203.6 bits, see alignment E=5.2e-65

Best Hits

Swiss-Prot: 66% identical to TOMB_ECO57: Hha toxicity modulator TomB (tomB) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_3327)

Predicted SEED Role

"FIG00948312: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (122 amino acids)

>EX31_RS22435 Hha toxicity modulator TomB (Rahnella sp. WP5)
MDEYSPKRHDIAQLRYLNEMLYDEGIATLGDSHHGWVNDPTSAVNLQLNELIEHIASFVM
SFKIKYPDDNHLSDLVEEYLDDTYTLFSNYGINDSDLRQWQKTKKRLFRMFSGDYICTLM
KT