Protein Info for EX31_RS21760 in Rahnella sp. WP5

Annotation: DNA repair protein RecN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details TIGR00634: DNA repair protein RecN" amino acids 7 to 558 (552 residues), 562.3 bits, see alignment E=8e-173 PF02463: SMC_N" amino acids 8 to 517 (510 residues), 66.6 bits, see alignment E=2.2e-22 PF13476: AAA_23" amino acids 10 to 223 (214 residues), 67.1 bits, see alignment E=3.5e-22

Best Hits

Swiss-Prot: 74% identical to RECN_ECOLI: DNA repair protein RecN (recN) from Escherichia coli (strain K12)

KEGG orthology group: K03631, DNA repair protein RecN (Recombination protein N) (inferred from 100% identity to rah:Rahaq_3449)

Predicted SEED Role

"DNA repair protein RecN" in subsystem DNA-replication or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>EX31_RS21760 DNA repair protein RecN (Rahnella sp. WP5)
MYRKVIMLAQLTISNFAIVRELEIDFHAGMTAITGETGAGKSIAIDALGLCLGNRADGSM
VRLGASRADICARFTLADTPSAKHWLAENQLDEGLDCLLRRTISNDGRSRGFINGTPVPL
SQLRELGQHLIQIHGQHAHQLLLKPEHQKALLDAYSDQPLLLSEMRKAYQNWHQSCRQLA
QYQQQMSERESRRQLLQYQLKELNEFAPQAGEYEQIDEEYKRLANSGQLLSLSQNALYLL
ADGEEQNIVSLLYSARNQLTELAELDSKMNDLIVMLDDASIQVSEASDELRHYSERLDMD
PNRLFELEQRLSRQMNLARKHHVSAEDLPELHRQLLEEQQELDDQETNQAELSEAVQRHY
QQAVAVAEQLHEKRQYFADELTHLITQSMQALSMPHGKFKIQVQFEPEHLNMEGADRLEF
QVTTNPGQPLQALAKVASGGELSRIALAIQVITAQKMETPALIFDEVDVGISGPTAAIVG
RLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKETDGEVTETQMNRLDKKARLQELARLL
GGSEVTRNTLANAKELLAA