Protein Info for EX31_RS21525 in Rahnella sp. WP5

Annotation: SDR family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF00106: adh_short" amino acids 2 to 196 (195 residues), 173.6 bits, see alignment E=7e-55 PF01370: Epimerase" amino acids 4 to 193 (190 residues), 21.9 bits, see alignment E=2.2e-08 PF08659: KR" amino acids 5 to 168 (164 residues), 59.2 bits, see alignment E=1e-19 PF13561: adh_short_C2" amino acids 8 to 246 (239 residues), 190.8 bits, see alignment E=6.1e-60

Best Hits

Swiss-Prot: 77% identical to YGFF_ECOLI: Uncharacterized oxidoreductase YgfF (ygfF) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 97% identity to rah:Rahaq_3496)

MetaCyc: 35% identical to lyngbyatoxin A monooxygenase (Moorena producens)
1.14.13.-; 1.14.13.-

Predicted SEED Role

"FIG00553873: hypothetical protein"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (247 amino acids)

>EX31_RS21525 SDR family oxidoreductase (Rahnella sp. WP5)
MKIALVTGASRGIGRATALLLAQQGYAVGVNYVNNETAAQSIINEIHQSGGKAIALKADI
SDEVQVVAMFKQLSNELGPITALVNNAGILFQQTTIENLSAARINKVLTTNVTGYFLCCR
EAVKIMSHRHGGKGGAIVNVSSAASRLGAPGEYVDYAASKGAVDTLTTGLALEVAAYGIR
VNCVRAGLIYTEMHASGGEPGRVDRVKANLPMQRGGQPEEVAQAIAWLLSDSASYATGSF
LDLAGGR