Protein Info for EX31_RS21260 in Rahnella sp. WP5

Annotation: MMPL family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 768 transmembrane" amino acids 12 to 28 (17 residues), see Phobius details amino acids 254 to 273 (20 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details amino acids 307 to 327 (21 residues), see Phobius details amino acids 347 to 369 (23 residues), see Phobius details amino acids 375 to 396 (22 residues), see Phobius details amino acids 424 to 444 (21 residues), see Phobius details amino acids 628 to 647 (20 residues), see Phobius details amino acids 654 to 675 (22 residues), see Phobius details amino acids 681 to 700 (20 residues), see Phobius details amino acids 712 to 731 (20 residues), see Phobius details amino acids 737 to 759 (23 residues), see Phobius details signal peptide" amino acids 29 to 29 (1 residues), see Phobius details PF03176: MMPL" amino acids 220 to 395 (176 residues), 38.6 bits, see alignment E=3.2e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_0906)

Predicted SEED Role

"FIG021862: membrane protein, exporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (768 amino acids)

>EX31_RS21260 MMPL family transporter (Rahnella sp. WP5)
MHPDLHRKLAQSWLLIIVLLVAALFWLLPRSQINSSVLALLPQQQETDIPQAFSDGFTQR
LDRQLMWLVSPPPGAGIQPAAEWLKHLQALPELSQVQGPMDAQRQQEWGTFFFKHRNALL
DDATRQRLTAGAESQSQWILGQIYSAFAGVSGKELANDPLLLVRASQMAQQQSSGGMTLD
QGWLMVRDKKGRSWYMVHGELKASSYDITSAKQTVAALGAVKEAFEARWPGAKVLERGTI
FYSNYASQQAEHDLSTIGAASVTGVFVLILLMFRSVLPMLLSLLSIAIGALSGTVFTLWV
FGEIHVMTLVLSTSIVGISADYTLYFLTERRVHGDSSTPLESLKKLFPALSVALLTTVVA
YLMLLIAPFPGLRQLAVFAAAGLSAACITVMCWYPYLSRRLPTGPAPGLTLIMRWLLAWR
SRKAVRIGLPLLILVLVVAGISRLKINDDIADLQSLPAGLQLQEQQIAALTGQTNDQKWL
VVYGDSAEQTLQRLEALRPKLAQAKEKGVIDGFRAITLPSQAQQQRDLSLLRQHAPQIIA
QLQQAGIPVAKPDLSAQTVDVPEWRNSVVSEGWRLLWLSLPDGRSAALIPVNGVHDSAAM
AALAASMPGTGWIDRKTEFSELFSQYRVYLTWLLALAVAVIAVTYLWRFRLPHGLVCLVP
TLLSLGMGVAALGFSGHNLNLFSLLALILVLGIGINYTLFFTNPRGTPTTSMFAIFMAAV
TTLLTFGMLVFSSTQAISSFGIVLSFGILTAFLLSPLTLPAKKRGRKK