Protein Info for EX31_RS20565 in Rahnella sp. WP5

Annotation: nickel/cobalt transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 transmembrane" amino acids 16 to 37 (22 residues), see Phobius details amino acids 70 to 87 (18 residues), see Phobius details amino acids 112 to 135 (24 residues), see Phobius details amino acids 151 to 169 (19 residues), see Phobius details amino acids 227 to 247 (21 residues), see Phobius details amino acids 254 to 281 (28 residues), see Phobius details amino acids 301 to 322 (22 residues), see Phobius details PF03824: NicO" amino acids 71 to 322 (252 residues), 122.9 bits, see alignment E=8.4e-40

Best Hits

KEGG orthology group: None (inferred from 99% identity to rah:Rahaq_1032)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (339 amino acids)

>EX31_RS20565 nickel/cobalt transporter (Rahnella sp. WP5)
MSLISTPSKTLSWRDLWPLAVFLLLLAGGASLLIHYWPRILLSSIIWQRELHQELAGLLR
QVKENPMQAGMTLAGFSLIYGVIHAIGPGHGKIVITTYLATHPSRLKNSLKLTFASAIVQ
GLVAILLVSVVLGVLQLSSRQLHQSSFWMERGSFILVMLLGLLLCWRALKRMWQTIKSLR
PVHAMKIHSLSPMGNETHVHDEHCGCGHQHVPNDQQLQAGGDLRTQVAIVLAMGLRPCSG
AIMVLLFSKVIGVYNWGVISAITMAIGTSLTVSLIGVLVFYSRALAVKLSATRTPAAWQR
ITWSLLALTGGIVLLVAGILLFSTGGGDVSPITGGPFRG