Protein Info for EX31_RS20410 in Rahnella sp. WP5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 131 to 153 (23 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 219 to 244 (26 residues), see Phobius details amino acids 264 to 287 (24 residues), see Phobius details

Best Hits

KEGG orthology group: K07027, (no description) (inferred from 46% identity to ebi:EbC_28980)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>EX31_RS20410 hypothetical protein (Rahnella sp. WP5)
MSPALKFNKSTINIALNILGSGLAIIGVIFVVARLHNYWQKADIQSLPPVSWLLIGFMAI
CYGIINLLLAIAWKSILLHLTISVEKRWAIRTYGISQLAKYIPGNIFHIAGRQAIAMASG
YPSRQVLKSNFYELILIALAGSTSIFLIIPIIFPVIPQVIGVMITVLSIIITFAVIKVFF
SKQLSHAFLLQLLFLSLSAIIFTFILTEISFKERIPLNYYIYIFGAYTIAWLVGLITPGA
PAGVGIRELVIVFCLRSIIPESELLLAVVLGRFVTVLGDVVFYFYVYTLLNIKKDKSHEP
VK