Protein Info for EX31_RS20370 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 transmembrane" amino acids 34 to 56 (23 residues), see Phobius details amino acids 62 to 81 (20 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 202 to 224 (23 residues), see Phobius details amino acids 251 to 274 (24 residues), see Phobius details amino acids 285 to 305 (21 residues), see Phobius details amino acids 317 to 336 (20 residues), see Phobius details amino acids 344 to 369 (26 residues), see Phobius details amino acids 389 to 414 (26 residues), see Phobius details amino acids 429 to 451 (23 residues), see Phobius details TIGR00792: sugar (Glycoside-Pentoside-Hexuronide) transporter" amino acids 31 to 468 (438 residues), 325 bits, see alignment E=3.3e-101 PF13347: MFS_2" amino acids 33 to 454 (422 residues), 236.4 bits, see alignment E=2.4e-74

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_1068)

Predicted SEED Role

"Putative permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (469 amino acids)

>EX31_RS20370 MFS transporter (Rahnella sp. WP5)
MPTDSVNTGSAPVNGEDRILSANAKLSVSEKIGYGLGDAGGTIITCLITSFLTFFYTDVF
GLTPAIVGTLFISLRVIDAISDPLMGILADRTQSRWGRFRPWQLWIALPIGVVGFLTFTV
PGLSGDAKIAYAFFTYFLLSVSYTAINVPYCALINTMTTDHREVMSCQSWRFVLCGVAGF
MVSVGLPWLVQVLGKGNAAVGYQQGVGLLCAVAVVMFLWCFFTVRERLPLALLGQFSVKE
HIRGMLKNDQLLLVLLMSFLLINVFNLRGGGYMYFITYVLKGGAGYASMFFGMVTLASIL
GAVIVNHLTKFIDSVRLYMLTNLVLAVFSLMLWFVPAGEHYQTLWLGIIFVHCVILGFTL
PLHFSIMAFADDYGHWKNGIRSSGMNFAFNLFFIKLAWASSAGIISLVFILVSYQAGAEH
QTAASLGGITLLETLLPAAMHLLLAGTLMFCKLDNKLLSRMSHDLAAKI