Protein Info for EX31_RS20355 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 44 to 67 (24 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 133 to 157 (25 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 230 to 252 (23 residues), see Phobius details amino acids 272 to 293 (22 residues), see Phobius details amino acids 305 to 324 (20 residues), see Phobius details amino acids 330 to 352 (23 residues), see Phobius details amino acids 364 to 387 (24 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details PF07690: MFS_1" amino acids 13 to 380 (368 residues), 205.7 bits, see alignment E=4.9e-65 amino acids 300 to 422 (123 residues), 42.2 bits, see alignment E=2.6e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_1071)

Predicted SEED Role

"D-galactonate transporter" in subsystem D-galactonate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (429 amino acids)

>EX31_RS20355 MFS transporter (Rahnella sp. WP5)
MFKNLRWIIVFLLFLVYMINYLDRVALSITVPMIEKELTINPEQFGMIFGSFFFGYAIFN
FIGGLAVDKFGPTLVMGLAVGLWSVFCGMTAIATGFYSMLILRVLFGMAEGPICASANKM
INGWFPKKQAATAMGLLSAGSPLGGAVAGPIVGYLAISFGWRPAFMVIASIGIVWMVVWF
FTVADNPLKSKRVSPEELRLVDEMKNEHLSEEENMAQAAHGLGYYLRQPIILVTAFAFFC
YNYILFFFLSWFPAYLVQAHGLNIKEMSLTTVIPWIVGFVGLALGGYISDKIFNITGRLL
LSRKIILVVSLLAAAICVALAGIVTSVVPAVILMSVSIFFLYTTGAIYWAIIQDVVHKSR
VGGTSGFIHLVGSVSGIIGPVVTGFIVQNTGRFDSAFILAGGVAALGAMLVFFVIKPPKH
LPDSTLSHN