Protein Info for EX31_RS20130 in Rahnella sp. WP5

Annotation: ethanolamine permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 transmembrane" amino acids 19 to 38 (20 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 91 to 116 (26 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 154 to 174 (21 residues), see Phobius details amino acids 193 to 212 (20 residues), see Phobius details amino acids 232 to 253 (22 residues), see Phobius details amino acids 281 to 304 (24 residues), see Phobius details amino acids 333 to 354 (22 residues), see Phobius details amino acids 361 to 383 (23 residues), see Phobius details amino acids 400 to 420 (21 residues), see Phobius details amino acids 425 to 443 (19 residues), see Phobius details TIGR00908: ethanolamine permease" amino acids 8 to 454 (447 residues), 644.7 bits, see alignment E=3.8e-198 PF13520: AA_permease_2" amino acids 14 to 419 (406 residues), 144.8 bits, see alignment E=4e-46 PF00324: AA_permease" amino acids 23 to 426 (404 residues), 115.2 bits, see alignment E=3.5e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_1116)

Predicted SEED Role

"Ethanolamine permease" in subsystem Ethanolamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (469 amino acids)

>EX31_RS20130 ethanolamine permease (Rahnella sp. WP5)
MQTTKVTPVLKRTLGSFKLWGIAVGLVISGEYFGWSYGWAQAGTLGFLITALVIAAMYCA
FIFSFTELTTSIPHAGGPFAYAYRAFGPTGGFVAGFATLVEFVFAPPAIAMAIGAYLNVQ
FPSIEPKWVAVGAYLVFMALNILGVSIAATFELLVTLLAIFELLVFMGVVAPGFEMSNFV
HGGWAGSDTFSPAAFSGIFAAIPFAIWFFLAIEGASMAAEEAKDPQRTIPKAFIGGILTL
TVLALGVMLFAGGVGDWTKLSNINDPLPQAMKLIVGSNSGWLHMLVWLGLFGLIASFHGI
IMGYSRQIFALARAGYLPKRLASVNARFQTPHLGIIAGGVVGIAAIFSDSLIVIGGQPLT
ANIVTMSVFGAIVMYIISMAALFKLRRSEPNLIRPFRAPLYPFAPALALVLAVVCLIAMI
YYNTLLFLIFAAMMLLAYAWFRITHQSRTDAAEDPQLRGLRPVPAKSSK