Protein Info for EX31_RS20030 in Rahnella sp. WP5

Annotation: response regulator transcription factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF00072: Response_reg" amino acids 4 to 112 (109 residues), 74.4 bits, see alignment E=8e-25 PF04397: LytTR" amino acids 158 to 254 (97 residues), 108.3 bits, see alignment E=1.9e-35

Best Hits

KEGG orthology group: K02477, two-component system, LytT family, response regulator (inferred from 100% identity to rah:Rahaq_1131)

Predicted SEED Role

"Hypothetical response regulatory protein ypdB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>EX31_RS20030 response regulator transcription factor (Rahnella sp. WP5)
MKAIIVEDEVPAQEELSYLINTHSSISIEAILDDGLDVLKYLQSHEVDAIFLDISIPSLD
GVLLAQNISKFAHKPYIVFITAYKEHAAEAFEIEAFDYILKPYHESRIVTMLQKLESHFR
RDKELTVKEPGDKPEGIAPVAGSTPRVSHSINLIKDERIIVTDINDIYYAAAQEKVTQVY
TRKEEFTMPMNITELCNRLPEEHFFRCHRSYCVNLSKIREIVPWFNNTYILRLSDLDFEV
PVSRSKVKEFRQLMRF