Protein Info for EX31_RS19640 in Rahnella sp. WP5

Annotation: DUF1646 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 49 to 68 (20 residues), see Phobius details amino acids 85 to 114 (30 residues), see Phobius details amino acids 163 to 186 (24 residues), see Phobius details amino acids 207 to 240 (34 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details amino acids 288 to 310 (23 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details PF03600: CitMHS" amino acids 24 to 309 (286 residues), 144.8 bits, see alignment E=5.4e-46 PF00939: Na_sulph_symp" amino acids 45 to 182 (138 residues), 32.1 bits, see alignment E=1e-11 PF07854: DUF1646" amino acids 83 to 228 (146 residues), 23.4 bits, see alignment E=5.5e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_1220)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>EX31_RS19640 DUF1646 family protein (Rahnella sp. WP5)
MLMAASGSVLKPFLRDRFLHLLILLGVILTLFQPEKISRFPQFVDWDTIVTLLGLLMLTK
GVEVSGYFDFVGRKMINAIDNERRLALFLVTAAALLSTFMTNDVALFIVIPLTITLKKLT
SLPVTRLIIFEALAVNAGSLLTPIGNPQNILLWNKSGQSFLHFIGQMAPLALITLAALLL
VTWFCFPSHSLKKIENNQGYPFRKRLLVSCVVLYVVFIACVDLGLALYGLLAVILCFLLL
ARNVLLRIDWPLILVFIVMFIDVRLLVGLNALQPAFTHIHSLPDYGHYLLSIGLSQVISN
VPATILMINYLPSGPLLAYAVNAGGFGLAIGSLANLISLRMANDKKIWLRFHYYSFPFLL
FSGITGWLLLTLFVK