Protein Info for EX31_RS19220 in Rahnella sp. WP5

Annotation: DUF3413 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 51 to 76 (26 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details PF11893: DUF3413" amino acids 6 to 252 (247 residues), 356.7 bits, see alignment E=8.2e-111 PF00884: Sulfatase" amino acids 277 to 508 (232 residues), 100.2 bits, see alignment E=2.1e-32

Best Hits

KEGG orthology group: K07014, (no description) (inferred from 100% identity to rah:Rahaq_1305)

Predicted SEED Role

"FIG001881: hydrolase of alkaline phosphatase superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (593 amino acids)

>EX31_RS19220 DUF3413 domain-containing protein (Rahnella sp. WP5)
MVTNRQRYREKVSQMISWGHWFALFNILLILGIGSRYLFVSDWPSSLQGRIYALVSWLGH
FSFIGFSAYLLIIFPLTFVVMSQRLLRFLSAILATAGLTLLLVDTEVFTRFHLHINPVVW
ELVVNPVQGEMARDWQLMFIAVPVIFLLEMLFGTWAWQKLRSLNRRNFAKPIVVLFIASF
FASHLMYIWADANFYRPITMQRANLPLSYPMTARKFLEKHGLLNAGEYQKRLIEQGNPEA
LAVEYPLNSLSFAKTGSKYNLLMVVLDGVHTATLDKDMPALSDFAKHNIRFDQHFSSGNR
NDTGQFGLFYGISPSYMQGILAARKPSALVTSLEQQGYEFGLFASDGFNSPLYRQALLTD
FTLPPPVKQTDQQTVYQWQQWLNGIGNGPWFSYVNLNGISSALRQDGASVPTGNTFIRRY
QNGALGVDDQIKAILQSLKDRGELEKTVVVITASHGIEFNENGTWGSGNSMNRRQLQVPL
IIHWPGTPAQNIDKLTDHADVMTTLMQRLLHVTTAPADYSQGEDLFAAKRRHNWVTTSDD
GTLVITTPDQTLELENNGDYRAFDINGKRIKDQKPELGLLLQVLTDEKRFLAN