Protein Info for EX31_RS18405 in Rahnella sp. WP5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1121 transmembrane" amino acids 157 to 178 (22 residues), see Phobius details amino acids 194 to 218 (25 residues), see Phobius details amino acids 424 to 441 (18 residues), see Phobius details PF07693: KAP_NTPase" amino acids 55 to 413 (359 residues), 68.6 bits, see alignment E=2.9e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1121 amino acids)

>EX31_RS18405 hypothetical protein (Rahnella sp. WP5)
MLSMLTLAQHSTNNPNLFNFSRNKYFPQGVAMDLILQTANPSDSDIFEGKSHEAVAIKMA
EIIKNTDISIIGLEGELGTGKSTIIKFLVNKLEGEFKFITFDAERYHYGSTKKSLIEIIF
KGMSDVSGVNKKELENYRDKALGNVVEYEKKVNSRISWWTITFILCTLLSVQTIRYFIVD
INQYLQPVDPKKMLSIWVIIFEALGLLSPTLVLLILACVRRYRNKKGTLTEAFISIGDLF
KRNSTDTISEKWMVSREVGTIELTEALEGFTKKETFTEECRFILIIDNLDRISGDKVKEL
WSDMELIAGVTHEQFRIVVPYSARQVAKSLAVEGHSGQEFIAKRIPVSFSVPPLISAGWQ
SAFSSLWKETVSRVEDMSCHETAQLLERWRPEEYPQITPRLMKKLVNDIHILALTAPKEE
PYRHILIALYILVVRYGGINIRTLLRAPTETDGGNSDMLSQEPVLDDKLKSTSTQLAKVF
NNDTNRWSEYLMSVHYQTGISLARSELMDTPLIDAVNTNNSNKLIELIGFWGFQTAWERC
SNKFNIYNWFIAVSSLPDNMLKSVIPELQQSVLLMDARYALHSREKYSGEFSLAINKLFN
EGYLLKSPFMERQWGFIISDLNNAQTNENHDMTETLSLLKEANIYSNMFKTNALDEINQY
LNGEFYVRFLMRNNSAFESLCVNDIVLADDGIEEMLRYLLDNEVAGDIFAPEVIRHIKLD
NSATSRIVENKSQNLPTSVFESLQMLKQRRPFTEYKTFRCIIFNSEWHSTNLISYYAHQS
NMLSIYPVEFAAQKMAHMVAIKTYTDLPSFTEYAENNEFAKLLSEYFVYFTSFDVVMSSV
ERTDVAPIVIGAIKIIFNSHKIARMNPIIFGKTHYHLLKYYAPELNLLQLVVSTESWFIE
NLKLLDFKELSSVYIKDIISSNLLKNSYNRFIELVKGTLITTEELHEFFNKIDSNIELIL
IQMKEDNIHLEFSETHAFSDWYRNSSLALIQDSKNVHLLWELLNEEKKKEVIKDLEDIIY
ERDTVIERRTSLIHDFGNEINFIEPEHTKERRAIAALFQVSKDDDILRCWLDRQSFHLNK
WNAEDSDTVASYVIDHQIDFPTLCDKSVFIKNRIKNKNTEE