Protein Info for EX31_RS18165 in Rahnella sp. WP5

Annotation: chromosome partition protein MukB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1482 PF04310: MukB" amino acids 2 to 227 (226 residues), 406.6 bits, see alignment E=6.2e-126 PF13555: AAA_29" amino acids 8 to 54 (47 residues), 30.5 bits, see alignment (E = 4.8e-11) PF16330: MukB_hinge" amino acids 645 to 810 (166 residues), 244.4 bits, see alignment E=1e-76 PF13558: SbcC_Walker_B" amino acids 1336 to 1424 (89 residues), 47.4 bits, see alignment 3.5e-16

Best Hits

Swiss-Prot: 80% identical to MUKB_CROS8: Chromosome partition protein MukB (mukB) from Cronobacter sakazakii (strain ATCC BAA-894)

KEGG orthology group: K03632, chromosome partition protein MukB (inferred from 83% identity to dda:Dd703_2198)

Predicted SEED Role

"Chromosome partition protein MukB" in subsystem DNA structural proteins, bacterial or MukBEF Chromosome Condensation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1482 amino acids)

>EX31_RS18165 chromosome partition protein MukB (Rahnella sp. WP5)
MIERGKFRSLTLVNWNGFFARTFDLDSLVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF
RNTTEAGATSGSRDKGLHGKLRAGVCYSVLDVVNSRHQRIVVGVRLQQVAGRDRKVDIKP
FTIQGLPVAVNPTEMLTETVGERQARVLSLQELKDRVEAMEGVQFKQFNSITDYHALMFD
LGVIPRRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR
ENRMTLEAIRVTQSDRDLFKHLISEATSYVAADYMRHANERRIHLDGALVLRNDLFTSRK
QLSGEQYRHVEMARELAEQSGAQSDLETDYQAASDHLSLVQTAMRQQEKIERYESDLEEL
TYRLEEQNEVVAEASELHAEHEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAL
QAIERARDLCQIPDLSIQNSEEWLETFQSKEQEATEILLMLEQKMSVASAAHNQFETAYQ
LVVKIAGEVSRSEAWQTARELLRDWSSQQHQAERVEPLRMRLSELEGRLREQQDAERQLQ
EFCKRTGQDVHPEDLDEMQRELEVQIEELQGVVSQAGERRMEMRQELERVQSRIRELTAR
APVWLAAQEALSQLSEQSKEPLESSQQVTEYMQQLLETERETTVERDEVAARKRRIEGQI
TRLSQPSGAEDSRMIALAERFGGVLLSEIYDDVTIDDAPYFSALYGPSRHAIVVPDLSLI
RDQLDGLDDCPEDLYLIEGDPQSFDDNVFEVEEMQGAVLVKTGDRQWRYSHFPQVPLFGR
AARENRLETLHKERENLSERYATLSFDVQKIQRAHQAFSRFIGSHLAVAFDADPEAEIRT
LSGRRGELERAINAHEGQNQQQRQQYEQAKDAIGMLNKLQPRVGLLCDETLIDRVEEIRE
EMEEAQDSARFIQQHGVSLSKLEPLVSVLQSDPEQHEQLKEDYAQAQHAQRLAKQQAFAL
TEVVQRRAHFSYTDSAGMLNENSDLNDKLRQRLEHAEAERTRAREQMRQHQTQLTQYSQV
LASLKSSFDAKRDMLKELSQELQDIGVQADANAEARAKTRRDELHTALSTNRARCNQLEK
QITFCEAEMDNLQKKLRKLERDYHQSREQVVTSKAGWCAVMRLVKDNGVERRLHRRELAY
MDGDELRSMSDKSLGALRLAVSDNEHLRDVLRLSEDPKRPERKIQFYIAVYQHLRERIRQ
DIIRTDDPVEAIEQMEIELGRLTEELTAREQQLAISSKSVANIIRKTIQREQNRIRQLNQ
GLQAVAFGQVKSVRLNVNVREAHAGLLDVLSEQQEQHQDLFSSNRLTFSEALAKLYQRLN
PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSILVM
VVQSWEDESSRMRGKDISPCRLLFLDEAARLDAKSIATLFELCDRLEMQLIIAAPENISP
EKGTTYKLVRKVFGNNEHVHVVGLRGFAPELPALVNTEADVS