Protein Info for EX31_RS18045 in Rahnella sp. WP5

Annotation: macrodomain Ter protein MatP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 PF06303: MatP" amino acids 2 to 85 (84 residues), 146.8 bits, see alignment E=2.2e-47 PF17414: MatP_C" amino acids 88 to 147 (60 residues), 103.8 bits, see alignment E=4.8e-34

Best Hits

Swiss-Prot: 82% identical to MATP_ESCF3: Macrodomain Ter protein (matP) from Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)

KEGG orthology group: K09911, hypothetical protein (inferred from 99% identity to rah:Rahaq_1550)

Predicted SEED Role

"Macrodomain Ter protein YcbG"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (153 amino acids)

>EX31_RS18045 macrodomain Ter protein MatP (Rahnella sp. WP5)
MKYQQLENLESGWKWKYLVKKHREGERITRHLENSAAQESVNQLLNLENEPVKVSDWIVN
NMNPALENRLKQTIRARRKRHFNAEHQHTRKKSIDLEFLVWQRLAGLAQRRGVTLSDTII
QLLEDAERKEKYANQMSSLKEDLEQILGKKDIG