Protein Info for EX31_RS17975 in Rahnella sp. WP5

Annotation: FtsH protease modulator YccA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 transmembrane" amino acids 26 to 47 (22 residues), see Phobius details amino acids 53 to 69 (17 residues), see Phobius details amino acids 76 to 100 (25 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 162 to 180 (19 residues), see Phobius details amino acids 193 to 217 (25 residues), see Phobius details PF01027: Bax1-I" amino acids 21 to 215 (195 residues), 156 bits, see alignment E=6e-50

Best Hits

Swiss-Prot: 77% identical to YCCA_ECOL6: Inner membrane protein YccA (yccA) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K06890, (no description) (inferred from 100% identity to rah:Rahaq_1564)

Predicted SEED Role

"Putative TEGT family carrier/transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (221 amino acids)

>EX31_RS17975 FtsH protease modulator YccA (Rahnella sp. WP5)
MDRIVASSSSSRAGSLLSTHRVLRNTYFLLALTLGVSAITATASTVLRLPSPGFLLTIVG
FYGLMFLTYRTANSPAGILSAFALTGFMGYTLGPLLSSLLSVGAGDIIMLALGGTALVFF
CCSAYVLTTRKDMSFLSGMMMAGFVVLLVAVIANLFLQIPALSLAISCLFILFSAGAILW
ETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGLSSRN