Protein Info for EX31_RS17855 in Rahnella sp. WP5

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 15 to 33 (19 residues), see Phobius details amino acids 40 to 58 (19 residues), see Phobius details amino acids 78 to 101 (24 residues), see Phobius details amino acids 133 to 161 (29 residues), see Phobius details amino acids 202 to 225 (24 residues), see Phobius details amino acids 235 to 259 (25 residues), see Phobius details amino acids 292 to 315 (24 residues), see Phobius details amino acids 336 to 356 (21 residues), see Phobius details amino acids 399 to 419 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 218 to 418 (201 residues), 74.9 bits, see alignment E=3.5e-25

Best Hits

Swiss-Prot: 65% identical to GANP_BACSU: Putative arabinogalactan oligomer transport system permease protein GanP (ganP) from Bacillus subtilis (strain 168)

KEGG orthology group: K10109, maltose/maltodextrin transport system permease protein (inferred from 100% identity to rah:Rahaq_1587)

Predicted SEED Role

"Maltose/maltodextrin ABC transporter, permease protein MalF" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>EX31_RS17855 sugar ABC transporter permease (Rahnella sp. WP5)
MRLHEENQAPLSASHHAPVALAVALIPGFGQFYNRQWAKGILFFIILICFAGVFYDFLRQ
GLWGLYTLGEEVPRDNSIFLLAKGIISLLIGAFGVAFYYWSLRDAWANGKRRDQGMELPS
VRKQYHLLLREGFPYLMITPGFILLVFVVVFPIIFGFSIAFTNYNLYHTPPAKLVDWVGF
KNFINIFTLNIWRSTLLDVLQWTVVWTVLATTLQCTVGVMLAILVNQKDLRFKALIRTVL
ILPWAVPGFVTILVFAGMFNDSFGVINNGILAALGIEPKAWLTDPFWTKTALILMQTWLG
FPFVFAMTTGVLQAIPNDLYEAATMDGASTWKKLKTITLPLVLYSIAPIIITQYTFNFNN
FNIIYLFNNGGPAVAGSNAGGTDILVSWIYKLTMSSSQYAIAATITILLSIFVVGIALWQ
FRSTNSFKQDDMA