Protein Info for EX31_RS17375 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 493 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 58 to 78 (21 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 110 to 131 (22 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 215 to 236 (22 residues), see Phobius details amino acids 242 to 263 (22 residues), see Phobius details amino acids 275 to 297 (23 residues), see Phobius details amino acids 318 to 338 (21 residues), see Phobius details amino acids 351 to 375 (25 residues), see Phobius details amino acids 385 to 407 (23 residues), see Phobius details amino acids 420 to 440 (21 residues), see Phobius details amino acids 460 to 482 (23 residues), see Phobius details TIGR00924: amino acid/peptide transporter (Peptide:H+ symporter)" amino acids 17 to 486 (470 residues), 222.7 bits, see alignment E=5e-70 PF07690: MFS_1" amino acids 23 to 340 (318 residues), 47 bits, see alignment E=1.7e-16 PF00854: PTR2" amino acids 87 to 445 (359 residues), 117.8 bits, see alignment E=5.5e-38

Best Hits

KEGG orthology group: K03305, proton-dependent oligopeptide transporter, POT family (inferred from 100% identity to rah:Rahaq_1690)

Predicted SEED Role

"Di-/tripeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (493 amino acids)

>EX31_RS17375 MFS transporter (Rahnella sp. WP5)
MSQSNNATASQHRTAIPAGAGTLFFVQTFATLGFAVLYSTLVLYATKKLGFSEDNANAIM
GVFGAFNYGLHMFGGYLGGRYLSNRNLFVLGMVLQVFGCALIALEGVTGLYWGLAMFLTG
SGLNVTCLNMMLTQRFAPDDDRRESAFLWNYAGMNLGFFIGFAVAGYFQLSENYRALFLF
ATLGNVAAIVVTLSRWSILADISTPLKEASRSQLLRRMAVGIAILIVLVPVIRMLLTHAE
FSSYFVVALGIVIFALMALVTFRHRDADERRRMKAYLLLALGSLVFWTLYQLAPMGLMLF
SENNINLNVYGIRVAPQWIQNINTVVIVIGGPLMALWFNRLRQRGWNIDIPAQFSASLFC
MGLGMLVLPLGIHLAGGDGLVAFKWIALSYLLQSIGELLISPIGYAMIGKLAPPRYQGVM
MGFWMMVTGVASVLASYISGLMPQNAGSTPALTNPGYSQVFNALGWGSVITGVVLLVLIP
LLRRMIHREPVAA