Protein Info for EX31_RS17060 in Rahnella sp. WP5

Annotation: FtsX-like permease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 246 to 270 (25 residues), see Phobius details amino acids 298 to 320 (23 residues), see Phobius details amino acids 335 to 357 (23 residues), see Phobius details PF12704: MacB_PCD" amino acids 22 to 204 (183 residues), 52.8 bits, see alignment E=6.6e-18 PF02687: FtsX" amino acids 249 to 359 (111 residues), 70.7 bits, see alignment E=1.1e-23

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 78% identity to yen:YE2493)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (370 amino acids)

>EX31_RS17060 FtsX-like permease family protein (Rahnella sp. WP5)
MFWLLVIRALRLRMQRVSVVFAALTVGAAIVTAMSAVYFDINAKMSQELRTFGANFYIGP
ASDNTLSQADFQQILTTAPAGLINAGSPYLYGMARTELEKVVVMGVWFDSLQPLVPYWQV
SGQWIGVNFDDRNAMIGVKLANRLQVKVGDSITLVGNDGQQRLQIKGIVESGDATDNVLI
VSLELAQKWLHQPGKISNALLNVNNDLGQVDNFARELRQQYPQLEIRPILKVSASEGQVL
DKIKGLMGVVSVVILVLSSLCVNTTLLAMVSERSREFALQKALGAGDRDIIRQMLTETLL
ISLAAALTGIVLGFLLAQLVGHTVFNAAIALRAPVFPLTLLSSVLVATLAAIVPTRYAID
VQPARVLKGE