Protein Info for EX31_RS16905 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 59 to 78 (20 residues), see Phobius details amino acids 85 to 106 (22 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 144 to 165 (22 residues), see Phobius details amino acids 171 to 193 (23 residues), see Phobius details amino acids 216 to 238 (23 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details amino acids 306 to 325 (20 residues), see Phobius details amino acids 344 to 365 (22 residues), see Phobius details amino acids 371 to 392 (22 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 250 (228 residues), 134.1 bits, see alignment E=5.9e-43 amino acids 247 to 388 (142 residues), 34.3 bits, see alignment E=1.3e-12 PF00083: Sugar_tr" amino acids 51 to 194 (144 residues), 54.3 bits, see alignment E=1.1e-18

Best Hits

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 77% identity to pva:Pvag_pPag30247)

Predicted SEED Role

"putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>EX31_RS16905 MFS transporter (Rahnella sp. WP5)
MILHNQTNNVLGSDAARWAIFALALGGFGIGTGEFIIMGLLPGVAESLNISEPQAGNAIA
SYALGVVVGAPVIAVLAARMARKKLLLCLMAVFFIGNIVSAFSGSYYQLIGARFLTGLPH
GAFFGVASLVAASLVTPEKRGRALSALMLGLTIATLVGVPLGSWIGQVFNWHVVFGFVGA
IGFLTCVLILRFVPMTANESNAHPLRELEALKNSQVLLTLLVGAIGFGGMFAVFSYIAPT
LINVAGMPAGLIPWAMTAFGLGMISGNLVGGRLAEKTVLKVIGWTLLWNILIMAAFPLLA
THVATGMIATFLIGTSSVLLPSLQIRLMDVANDSQTLAAAMNHSALNIANAMGAWLGGLA
VSSGFGWISTAYVGVFLGITGLVVYAVTVWHAGRRQTS