Protein Info for EX31_RS16880 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 51 to 74 (24 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 108 to 132 (25 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 172 to 190 (19 residues), see Phobius details amino acids 221 to 241 (21 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 309 to 332 (24 residues), see Phobius details amino acids 348 to 370 (23 residues), see Phobius details amino acids 384 to 404 (21 residues), see Phobius details PF12832: MFS_1_like" amino acids 20 to 370 (351 residues), 109.4 bits, see alignment E=3.2e-35 PF03825: Nuc_H_symport" amino acids 20 to 408 (389 residues), 313.5 bits, see alignment E=3.5e-97 PF07690: MFS_1" amino acids 21 to 361 (341 residues), 40 bits, see alignment E=3.6e-14

Best Hits

KEGG orthology group: None (inferred from 87% identity to pva:Pvag_pPag30252)

Predicted SEED Role

"Nucleoside permease NupG"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>EX31_RS16880 MFS transporter (Rahnella sp. WP5)
MPTSQRFDVVIPQHRLLVPRLSLMMFMQFFIWGSWSVTLGLVMTQHNMSLLIGDAFSAGP
IASILSPFVLGMLVDRFFPSQKVMAVMNLLGGVILWFVPAALEAENGALLIALLFGYTLC
FMPTLALSNNIAFHSLASSDKSFPVVRVFGTIGWIVAGIFIGVTGISSSTTIFSLAAVCS
VALAIYSLTLPHTPAPAKGLPFQLRDLFCADAFALLKIRHFFIFSLCATLISIPLGTYYA
YTASWLADAGVENVSTVMSFGQMSEIFFMLVIPLLFRRLGVKYMLLAGMCAWFIRYALFA
LGMGDEGRALIYLGILLHGVCYDFFFVVGFIYTDRIAGDKVKGQAQSMIVMFTYGIGMLL
GSQISGVLYNSLVAGHGTAQNWAIFWWIPAVAAAAIALLFLFTFKYRDEAA