Protein Info for EX31_RS16615 in Rahnella sp. WP5

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 transmembrane" amino acids 14 to 38 (25 residues), see Phobius details amino acids 43 to 66 (24 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details PF09335: SNARE_assoc" amino acids 27 to 153 (127 residues), 51 bits, see alignment E=1e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_2348)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (189 amino acids)

>EX31_RS16615 membrane protein (Rahnella sp. WP5)
MFSLETLETLIRAHGLLIMTPLAILEGPVVTVIAGYFVRLGYFSLSAMLTVVMIGEVLGD
IIFYSLGRWVIKADGQPPAWLARLGLTQPRLEKMVKSFDRKGGRLLVLAKLTHSAGALVL
TGAGMARMPLVPFLFYNIIAAIPKSLFLLGIGWMFGDIIAQVNNWIAWVSLGLFILLAVT
GVIWLKSKQ