Protein Info for EX31_RS16605 in Rahnella sp. WP5

Annotation: iron permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 33 to 53 (21 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 114 to 138 (25 residues), see Phobius details amino acids 144 to 168 (25 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 242 to 263 (22 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details amino acids 488 to 508 (21 residues), see Phobius details PF03239: FTR1" amino acids 1 to 260 (260 residues), 159.5 bits, see alignment E=5.7e-51

Best Hits

KEGG orthology group: K07243, high-affinity iron transporter (inferred from 99% identity to rah:Rahaq_2346)

Predicted SEED Role

"Ferrous iron transport permease EfeU"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (542 amino acids)

>EX31_RS16605 iron permease (Rahnella sp. WP5)
MLATFIIGLREGLEAALIVGIIAAFLRKNGKSLFAMWMGVGLALMLSVMVGVALEMTERA
LPQASQEGMESVIGLIAVFFVTGMIMWMNTHAHTMKNELESEAAQAISQSGARALASMAF
LAVLKEGFETSVFLLATFSVAQSAMWAAAGAVTGLLVAVGIGCGIYFGGIRINLSRFFRF
TGLFLILVAGGLIINALLTAHEAGWLNIGQQRVADLAWLVPPGTVRSALITGVLGIPPDP
NLIQTVAWLLYIVIVSLLIYWPAHRRPSAINGARLRLAFAGVMVVSAVGLRLFYPNYTLQ
LPASAPLVSNDTRNTAPAGEVRLLSDTNGYQLNVTPADGNVRVTVLPASAAIAGHHGGLQ
TREWQTKSRFTPADAPAVLTLDQLVAFYGNRIPIGLNPAMHPGPYQAQWSVSCTVQASVA
QGVLLGASARADELITLSGSGLQSPRTITVRHPTAAASACNWQVSGAYQQTVSDALQQLQ
IAQDTYRFWAYMLPFILAALALIFVFSARRVLLKHRNERLAAAGEYSLSFGSQLHTNLPK
NK