Protein Info for EX31_RS16595 in Rahnella sp. WP5

Annotation: deferrochelatase/peroxidase EfeB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details TIGR01412: Tat-translocated enzyme" amino acids 10 to 421 (412 residues), 438.2 bits, see alignment E=3.1e-135 PF04261: Dyp_perox_N" amino acids 65 to 220 (156 residues), 98.1 bits, see alignment E=5e-32 TIGR01413: Dyp-type peroxidase family" amino acids 65 to 411 (347 residues), 280.7 bits, see alignment E=1.7e-87 PF20628: Dyp_perox_C" amino acids 231 to 409 (179 residues), 170.4 bits, see alignment E=2.9e-54

Best Hits

KEGG orthology group: K07223, putative iron-dependent peroxidase (inferred from 100% identity to rah:Rahaq_2344)

Predicted SEED Role

"Ferrous iron transport peroxidase EfeB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (423 amino acids)

>EX31_RS16595 deferrochelatase/peroxidase EfeB (Rahnella sp. WP5)
MSDKHQPAREAGKFSRRDLLKGAVAGASALAIPAVSHAHGQTAARDPEDKVDLSREHPFY
GTGGQAGISTQPQRHIMYMTFDLTTTRRQDLQVLLARWSSAIAQLMKGGTIGQIEPLRNS
GVGMDTGEALDLGPASLTVTVGLGPRVFSETFGLVKQKPLLMRELMQLPSDDLQPEVTGG
DLSLQACADDPQVAYHAIRDLARIAKSTGAAQTRWTVMGFGRASAGKGQSTPRNLFGFKD
GTRNITEKADFDKYVWINDGGPAWQQQGTYQVVRKIKMHIESWDTDRVSDQNNVFGRHKV
SGAPLTGTREFDTPDFKKTAADGNLIIPATAHISLAAHENNGGIKILRRSYNYTDGLNNM
AQLDAGLLFISYQKDPAQFEALQNRLGASDAMNEYISHIGSGIFFVPPAPKEGEYIGADM
FKV