Protein Info for EX31_RS16550 in Rahnella sp. WP5

Annotation: PTS sugar transporter subunit IIC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details amino acids 108 to 126 (19 residues), see Phobius details amino acids 133 to 158 (26 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 210 to 259 (50 residues), see Phobius details amino acids 281 to 302 (22 residues), see Phobius details amino acids 340 to 366 (27 residues), see Phobius details amino acids 368 to 369 (2 residues), see Phobius details amino acids 385 to 387 (3 residues), see Phobius details amino acids 393 to 411 (19 residues), see Phobius details TIGR00410: PTS system, lactose/cellobiose family IIC component" amino acids 13 to 424 (412 residues), 354.8 bits, see alignment E=3.6e-110 PF02378: PTS_EIIC" amino acids 30 to 349 (320 residues), 182.7 bits, see alignment E=4.9e-58

Best Hits

KEGG orthology group: None (inferred from 78% identity to tau:Tola_3103)

Predicted SEED Role

"PTS system, cellobiose-specific IIC component (EC 2.7.1.69)" in subsystem Beta-Glucoside Metabolism (EC 2.7.1.69)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.69

Use Curated BLAST to search for 2.7.1.69

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>EX31_RS16550 PTS sugar transporter subunit IIC (Rahnella sp. WP5)
MSNAFFNFIENKITPVAAVAGTQRHIMAVRDGFIGAMPFMIVGSFLLIFAFPPFAPDTTF
FIGKLWLSVSQQYFNEIMTPFHMTMGIMACYISAGIAYNLAQTYKLDAFSCAMLSLMTFL
LITSPYKDGSLPAAFLGGSGIFTAILVGIFCVELVRILKLYNIGIKLPEQVPDKIRHSFN
LLIPAIVIICTIYPLNVVLQHQFGMLLPEIIMTAFTPLISAADSLPAVLIAVLLCQVLWF
SGINGGAIVGGILQPFYLINLGLNQTALANGLPIPHIFAEAFWAFFINLGGSGATLALVI
LYMRSKAVHLRAIGRLSVVPVCFNINEPVIFGSPVVMNPVLFIPFIIAPVVNAIIAWFAT
TSGLIAKVISLVPWTTPAPVGAAWGAGWAMNNTLLVIALIVIDIFIYLPFFKIYEKQLLE
QEREQEMATA