Protein Info for EX31_RS15825 in Rahnella sp. WP5

Annotation: PTS sugar transporter subunit IIC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00410: PTS system, lactose/cellobiose family IIC component
  • amino acids 16 to 425 (410 residues), 356.9 bits, E=8.1e-111
• PF02378: PTS_EIIC
  • amino acids 32 to 351 (320 residues), 192.9 bits, E=3.9e-61

Best Hits

KEGG orthology group: K02761, PTS system, cellobiose-specific IIC component (inferred from 100% identity to rah:Rahaq_4374)

Predicted SEED Role

"PTS system, cellobiose-specific IIC component (EC 2.7.1.69)" in subsystem Beta-Glucoside Metabolism (EC 2.7.1.69)

KEGG Metabolic Maps

• Aminosugars metabolism
• Ascorbate and aldarate metabolism
• Fructose and mannose metabolism
• Galactose metabolism
• Glycolysis / Gluconeogenesis
• Nucleotide sugars metabolism
• Starch and sucrose metabolism

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.69

Use Curated BLAST to search for 2.7.1.69

Protein Sequence (441 amino acids)

>EX31_RS15825 PTS sugar transporter subunit IIC (Rahnella sp. WP5)
MSISQSLFTFIEQKISPFAARLSSQRHVMAVRDGFISAMPFMIVGSFLLVFVHPPFSPES
SWGFARSWLALSAKYEVQILTPFNMTMGIMSIYISASIAYNLARSYKLDPFMTAMLALMS
FLLVAAPQIDEKMSTAALGGVGIFTAILVAIYVTELTRLLKKYNIGIRLPEQVPSNIKHS
FDLLIPIVAVVITLFPLSLLVQSGFDMLLPQAIMALFEPLISAADSLPAVLLAVLICHLL
WFAGIHGSAIVSGMLQAFWLTNLGLNQTDLAAGLPMTHIMTEAFWNFLIVIGGSGATMGL
VLLFCRSKSAHLRTMGKLSLVPSCFNINEPVIFGTPIVMNPVFFIPFLLAPMVNAVIAYL
AVSTDLLPHMISLVPWTSPAPIGAAWAMGWDFKVSVLVILLMALSMVIYYPFFKVYEKQL
LTQEKAAEAEQVFTEKADAAQ