Protein Info for EX31_RS15615 in Rahnella sp. WP5

Annotation: high-affinity branched-chain amino acid ABC transporter permease LivM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 122 to 145 (24 residues), see Phobius details amino acids 151 to 170 (20 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details amino acids 269 to 286 (18 residues), see Phobius details amino acids 319 to 343 (25 residues), see Phobius details amino acids 356 to 381 (26 residues), see Phobius details amino acids 391 to 409 (19 residues), see Phobius details PF11862: DUF3382" amino acids 16 to 113 (98 residues), 68.1 bits, see alignment E=6.8e-23 PF02653: BPD_transp_2" amino acids 121 to 406 (286 residues), 167.6 bits, see alignment E=3.2e-53

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to rah:Rahaq_2731)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (429 amino acids)

>EX31_RS15615 high-affinity branched-chain amino acid ABC transporter permease LivM (Rahnella sp. WP5)
MMSQTAVNSGFSFKRCLLDAIFAGLVALIIFGPVVGVVLDGYSFNFHSQRLVWIIAAVMT
GRFLLSAFLETTAGQKMRARFESDSAGVYVRSPDYKSHLRWVIPLLIVLAIFFPFVATKY
ILTVAILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWSMLPL
AAVMAALAGALLGFPVLRMHGDYLAIVTLGFGEIIRLVLTNWLSFTGGPNGVSAPPPTFF
GLEFGRRAKEGGVPFHEFFHLTYNPNMKFIFIYAVLVLVVLLVLFIKHRLTRMPIGRAWE
ALREDEIACRAMGLNHVLVKLSAFTLGASTAGIAGVFFATYQGFVNPTSFTFFESALILA
IVVLGGMGSTIGVVLAAFVLTVAPELLRSFAEYRVLLFGVLMVVMMIWRPRGLIRISRSG
FAVRKGVAP