Protein Info for EX31_RS15105 in Rahnella sp. WP5

Annotation: amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details amino acids 44 to 62 (19 residues), see Phobius details amino acids 98 to 121 (24 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 156 to 178 (23 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details amino acids 242 to 262 (21 residues), see Phobius details amino acids 276 to 301 (26 residues), see Phobius details amino acids 334 to 355 (22 residues), see Phobius details amino acids 361 to 383 (23 residues), see Phobius details amino acids 403 to 425 (23 residues), see Phobius details amino acids 431 to 450 (20 residues), see Phobius details PF00324: AA_permease" amino acids 18 to 430 (413 residues), 385.9 bits, see alignment E=2.7e-119 PF13520: AA_permease_2" amino acids 22 to 438 (417 residues), 146.8 bits, see alignment E=9.7e-47

Best Hits

Swiss-Prot: 78% identical to YIFK_SALTY: Probable transport protein YifK (yifK) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 100% identity to rah:Rahaq_4252)

MetaCyc: 78% identical to threonine/serine:H+ symporter ThrP (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-71; TRANS-RXN-72

Predicted SEED Role

"Probable transport protein YifK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (464 amino acids)

>EX31_RS15105 amino acid permease (Rahnella sp. WP5)
MANQEEKGGLHRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYILAGVFVFF
IMRSMGEMLHLEPVAGSFAVYAHKYLGPYYGYLTAWSYWFMWIAVGISEITAIGVYAQYW
FPDLPQWIPALMAVAIVAAANLAAVKLYGEMEFWFALIKITTIIVMIVVGLAVIFFGFGN
HGEAVGFANLTAHGGFFAGGWKGFLFALCIVVASYQGVELVGITAGEAKNPQVTLKRAIN
NILWRILIFYVGAIFVIITIFPWNEMGTHGSPFVLTFAKIGIASAAGIINFVVLTAALSG
CNSGMYSCGRMLYALSKNRQLPAFLSNVSKSGVPVYGIAITILCLLVGSCLNYIIPNPEK
VFVYVYSASVLPGMVPWFVVLISQLRFRDAHKEKLKNHPFKSVLFPYTNYLTLIFLACVL
VGMAINPDTRVSLLVGGIFIAAVSLIYFGLGMHKRAALTAEKAK