Protein Info for EX31_RS14895 in Rahnella sp. WP5

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 151 to 173 (23 residues), see Phobius details amino acids 205 to 226 (22 residues), see Phobius details amino acids 258 to 278 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 68 to 285 (218 residues), 35.2 bits, see alignment E=5.3e-13

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 100% identity to rah:Rahaq_4214)

Predicted SEED Role

"Multiple sugar ABC transporter, membrane-spanning permease protein MsmF" in subsystem Fructooligosaccharides(FOS) and Raffinose Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>EX31_RS14895 sugar ABC transporter permease (Rahnella sp. WP5)
MIKMKESSLGGLLASTYLGYSLVFWLYPFLWLAVLSFTDWKFIGAPSFNGVKNIIAVMQN
PLFWTAMYNVFKFLAYYLPIVLVSSLLFAFGLRKIKYGKAFVALSFLLANVSSGVAYSIV
FSKLFSETGPINTFLMDMFGVNVPWFTHPDFAMLSIALIITWKFVGYYGLIFYSGLITIP
KDIYDAADLDKTTGLGKIWHITLPLMNAQIVMVLVLAITVAFSIFTEPYLITGGGPLKST
TTPMVVMYEAAFRQMQPSWAATMSIIVALFSFTLIWILRRCLEKKIEIV