Protein Info for EX31_RS14755 in Rahnella sp. WP5

Annotation: sn-glycerol-3-phosphate ABC transporter permease UgpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 112 to 137 (26 residues), see Phobius details amino acids 157 to 181 (25 residues), see Phobius details amino acids 203 to 228 (26 residues), see Phobius details amino acids 267 to 287 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 89 to 293 (205 residues), 65 bits, see alignment E=3.9e-22

Best Hits

Swiss-Prot: 88% identical to UGPA_YERE8: sn-glycerol-3-phosphate transport system permease protein UgpA (ugpA) from Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)

KEGG orthology group: K05814, sn-glycerol 3-phosphate transport system permease protein (inferred from 100% identity to rah:Rahaq_4183)

MetaCyc: 79% identical to sn-glycerol 3-phosphate ABC transporter membrane subunit UgpA (Escherichia coli K-12 substr. MG1655)
ABC-34-RXN [EC: 7.6.2.10]; 7.6.2.10 [EC: 7.6.2.10]

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (295 amino acids)

>EX31_RS14755 sn-glycerol-3-phosphate ABC transporter permease UgpA (Rahnella sp. WP5)
MSSHRPGFGCSWLPYALVLPQLLITAIFFLWPAGQALWYSVQTLDPFGLSSTFAGLTNFV
QLFQDSYYLDSFYTTLKFSFMVAFIGLAVSLFFAALVDHVVRGSRIYQTLMILPYAVAPA
VAAVLWMFLFSPGLGLITHFLGSIGYNWNHAQNSGQAMFLVVLASVWKQVSYNFLFFLAA
LQSIPKSLVEAAAIDGAGPVRRFFNLVLPLISPVSFFLLVVNLVYAFFDTFPVIDAATAG
GPMQATTTLIYKVYREGFSGLDLSSSAAQSVILMLLVCGLTFIQFRFVERKVRYQ