Protein Info for EX31_RS14725 in Rahnella sp. WP5

Annotation: DMT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 78 to 81 (4 residues), see Phobius details amino acids 87 to 105 (19 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details amino acids 203 to 222 (20 residues), see Phobius details amino acids 234 to 253 (20 residues), see Phobius details amino acids 259 to 276 (18 residues), see Phobius details PF00892: EamA" amino acids 3 to 128 (126 residues), 36.1 bits, see alignment E=3.4e-13 amino acids 139 to 274 (136 residues), 43.5 bits, see alignment E=1.8e-15 TIGR00950: carboxylate/amino acid/amine transporter" amino acids 11 to 273 (263 residues), 276.4 bits, see alignment E=1.2e-86

Best Hits

Swiss-Prot: 77% identical to BIOP_SALTI: Biotin transporter (bioP) from Salmonella typhi

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_4177)

MetaCyc: 75% identical to biotin transporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-240

Predicted SEED Role

"FIG00639538: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (299 amino acids)

>EX31_RS14725 DMT family transporter (Rahnella sp. WP5)
MPLLIITTILWAFSFSLIGVYLAGQVDSVFSVLVRLGLAALVFLPFLRWKGHQLTTILLY
MAVGAMQLGIMYLISFEAYLYLSVPEFLLFTVMTPLYVTLIYDLISGRKIRIGYALSALL
AVAGAAIIRYDHISEHFIIGLLLVQAANICFAIGQVGYKRLMETRPMPQHTAFSWFYIGA
LLCAVVAWFLWGNPQKLPTTDLQWGILVWLGIGASGLGYFMWNYGATQVDAGTLGIMNNF
HVPAGLLVNLAIWQQQPHWPSFIIGAAVIMSSLWVHRRWVVPRRAQTADDRTRAAAPNE