Protein Info for EX31_RS14375 in Rahnella sp. WP5

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 PF13439: Glyco_transf_4" amino acids 95 to 206 (112 residues), 29.7 bits, see alignment E=9.7e-11 PF00534: Glycos_transf_1" amino acids 214 to 378 (165 residues), 109.7 bits, see alignment E=1.8e-35 PF13692: Glyco_trans_1_4" amino acids 227 to 365 (139 residues), 85.2 bits, see alignment E=8.2e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_4337)

Predicted SEED Role

"glycosyl transferase, group 1 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>EX31_RS14375 glycosyltransferase (Rahnella sp. WP5)
MGQDRSKILLLDSGKEWGGGTNSMLELLKRIDREKFEISCCFYNDYARDNGETISQILNS
LNVPVFFIPQVKQPAWAKIAKEVLRTLFFFSSNLRQKAIYSIDKIWRINPNIRKIHSLLE
LGQFDILYMNNQPSSNVEGYYSTAGLPTEIVQHCRIEPVLNREVVRIVNRFCHSIISVSQ
GVQEQLLKRGVRKELCFTVFNGIDIHQPLPEGTKIREELAADNDTFIFGSIGSLINRKAH
HFTLLALDKFNRAFPEAKWKMVFVGEGPNLRRLIQQTSALNMMDKVVFTGFQSNALEYLS
AFDAFILGSKSEGLPRVVLESMLLKTPVIGSNVTGTAELIKNAETGMLFEYGDIDMLFNH
MKTLYLNAHLRNEIAEQANLTVREKFAIEKYVSGVETVLSSVKKKQG