Protein Info for EX31_RS14235 in Rahnella sp. WP5

Annotation: cell division protein FtsN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details TIGR02223: cell division protein FtsN" amino acids 1 to 307 (307 residues), 262.4 bits, see alignment E=3.1e-82 PF05036: SPOR" amino acids 240 to 307 (68 residues), 59.2 bits, see alignment E=2.1e-20

Best Hits

KEGG orthology group: K03591, cell division protein FtsN (inferred from 100% identity to rah:Rahaq_4309)

Predicted SEED Role

"Cell division protein FtsN" in subsystem Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>EX31_RS14235 cell division protein FtsN (Rahnella sp. WP5)
MAQRDYVSRGRSGARRKSTSRSKKRSSTTISKTMVVLAVAVLVVFVGGLYFIAHNKHEEA
TVLPTHAVRPGNGLPPKPEERWRYIKELENRQMGVTTPTEPTAGGQVESKTQLTPEQRQL
LEQMQADMRQTPTQLSEVPYNDPNQATQAPAHTQRQVQQQQPTYAQQQPVTQPRQVQPQP
TYTPQTQPVRAPQAQVQTQPVQPKPKPQVKEPVKEAPKPQQPATITQAEPEKPKAQEKTQ
RFVVQCGSFKGSEQAESQRAKLAFEGFEGRITTGGGWSRVVIGPYNSRSGADSTLSRLKG
AGISGCIPVATGG