Protein Info for EX31_RS14150 in Rahnella sp. WP5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 528 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 86 to 103 (18 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 150 to 169 (20 residues), see Phobius details amino acids 180 to 201 (22 residues), see Phobius details amino acids 251 to 273 (23 residues), see Phobius details amino acids 281 to 304 (24 residues), see Phobius details amino acids 314 to 333 (20 residues), see Phobius details amino acids 339 to 358 (20 residues), see Phobius details amino acids 396 to 414 (19 residues), see Phobius details amino acids 426 to 448 (23 residues), see Phobius details PF13347: MFS_2" amino acids 13 to 451 (439 residues), 172.5 bits, see alignment E=1.1e-54 PF07690: MFS_1" amino acids 22 to 364 (343 residues), 63.3 bits, see alignment E=2e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_4290)

Predicted SEED Role

"Rhamnogalacturonide transporter RhiT" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (528 amino acids)

>EX31_RS14150 MFS transporter (Rahnella sp. WP5)
MKTRKIGFFNYIAYGSGDFLGAGTTALTAAWLLYFYTTFCGLSPIEATFIFATARVADAV
LSPLMGYLTDNFGNTWLGKRFGRRKFFILLGIPCVFSYSFMWVGDMGYVYYLLTYLLFDI
VYTMILVPYETLVPEMTDDFKQKTKFSGARIALAQLSAILAAFLPGILLQHFGKDNAISF
FYSSLVFAVICAFVLTLVYFFTWERPEELKSEATKKIERERQQLTLAQSLKRLKVELSST
LRIKIFRQHLGLYLGGYIAQDVFNAVFTYYVVFVLMQSAAIASNLMGMMAILQFVAVIGM
IPLCIRFGPAPSYRLAVSLFGLAAISYGVLYYTGMNDSMSLLLLISALAGLGRGGINYVP
WNIYTYIADVDETITGQRREGIFAGVMTLTRKASQAGAVMLVGIILQLAGFVSGQSQQVP
AVGHTILGVLVIGSLLMLSIGFTISLFFRLNQKTHGVLTRETQKMRDANRIVPEQITPED
RATVEMLTGMKYESLWGNNNIGYLHRNNPPPEKLTRENTAEMPVQGRL