Protein Info for EX31_RS13895 in Rahnella sp. WP5

Annotation: Fe-S cluster assembly protein SufD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 TIGR01981: FeS assembly protein SufD" amino acids 143 to 419 (277 residues), 288.4 bits, see alignment E=2.6e-90 PF01458: SUFBD" amino acids 181 to 404 (224 residues), 244.4 bits, see alignment E=5.5e-77

Best Hits

KEGG orthology group: K09015, Fe-S cluster assembly protein SufD (inferred from 100% identity to rah:Rahaq_2796)

Predicted SEED Role

"Iron-sulfur cluster assembly protein SufD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>EX31_RS13895 Fe-S cluster assembly protein SufD (Rahnella sp. WP5)
MAGLPTKSNVPAAGSSHAMQQLYRLFESRGGEQSPHAHAHWQQVLRLGFPHAKLEDWKYT
PVSSLLGNQFFAPQQQALTVEKIKSLALPLECYRLVFVDGRFDASLSDSDTGAFEIEKLS
PSAQQTLPDPIQSEVFLHLTESLAQDSFSVRLPVGKHAEKPLYLLHLSSGRDQSREMNTV
HHRYHLAIENGANAEVIEHYLSLNDQGHFTGARMTINVGDNADFTHYKLAFESQASFHFS
HNDLVIGRDARVSSHSFLLGAGLTRNNTSAQLNGENSNLDINSLVLPVDSEIADTRTYLE
HNKGYCNSKQLHKVIVNDRAKAIFNGMIKVAQHALKTDGKMTNNNLLLGKHTEVDTKPQL
EIYADDVKCSHGATVGRIDDEQLFYLRTRGISGQDAQQMIIFAFAAELTEAIKNETLREV
VIARIAGRLNRGK